Accurate implementation of leaping in space: The spatial partitioned-leaping algorithm

Biochemical simulations: stochastic, approximate stochastic and hybrid approaches

(2009) J. Pahle   BRIEFINGS IN BIOINFORMATICS

Quantifying stochastic effects in biochemical reaction networks using partitioned leaping

(2009) Leonard A. Harris et al.   PHYSICAL REVIEW E

Macromolecular Crowding and Confinement: Biochemical, Biophysical, and Potential Physiological Consequences

(2008) Huan-Xiang Zhou et al.   Annual Review of Biophysics

Nuclear functions in space and time: Gene expression in a dynamic, constrained environment

(2008) Laura Trinkle-Mulcahy et al.   FEBS LETTERS

Generalized binomial τ-leap method for biochemical kinetics incorporating both delay and intrinsic noise

(2008) André Leier et al.   JOURNAL OF CHEMICAL PHYSICS

Unbiased τ-leap methods for stochastic simulation of chemically reacting systems

(2008) Zhouyi Xu et al.   JOURNAL OF CHEMICAL PHYSICS

Incorporating postleap checks in tau-leaping

(2008) David F. Anderson   JOURNAL OF CHEMICAL PHYSICS

A constant-time kinetic Monte Carlo algorithm for simulation of large biochemical reaction networks

(2008) Alexander Slepoy et al.   JOURNAL OF CHEMICAL PHYSICS

Cell biology: Bacteria's new bones

(2008) Ewen Callaway   NATURE

Accelerated stochastic and hybrid methods for spatial simulations of reaction–diffusion systems

(2007) Diego Rossinelli et al.   CHEMICAL PHYSICS LETTERS

Efficient kinetic Monte Carlo simulation

(2007) Tim P. Schulze   JOURNAL OF COMPUTATIONAL PHYSICS