Systematic coarse graining from structure using internal states: Application to phospholipid/cholesterol bilayer

Multiscale modeling of emergent materials: biological and soft matter

(2009) Teemu Murtola et al.   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

Multiscale simulations of heterogeneous model membranes

(2008) Sagar A. Pandit et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES

Lipids on the move: Simulations of membrane pores, domains, stalks and curves

(2008) Siewert J. Marrink et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES

Atom-scale molecular interactions in lipid raft mixtures

(2008) Perttu S. Niemelä et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES

A Systematic Methodology for Defining Coarse-Grained Sites in Large Biomolecules

(2008) Zhiyong Zhang et al.   BIOPHYSICAL JOURNAL

The multiscale coarse-graining method. II. Numerical implementation for coarse-grained molecular models

(2008) W. G. Noid et al.   JOURNAL OF CHEMICAL PHYSICS

Modeling diffusive dynamics in adaptive resolution simulation of liquid water

(2008) Silvina Matysiak et al.   JOURNAL OF CHEMICAL PHYSICS

Biomolecular simulations of membranes: Physical properties from different force fields

(2008) Shirley W. I. Siu et al.   JOURNAL OF CHEMICAL PHYSICS

The multiscale coarse-graining method. I. A rigorous bridge between atomistic and coarse-grained models

(2008) W. G. Noid et al.   JOURNAL OF CHEMICAL PHYSICS

The relative entropy is fundamental to multiscale and inverse thermodynamic problems

(2008) M. Scott Shell   JOURNAL OF CHEMICAL PHYSICS

The MARTINI Coarse-Grained Force Field: Extension to Proteins

(2008) Luca Monticelli et al.   Journal of Chemical Theory and Computation

Spectral Coarse Graining and Synchronization in Oscillator Networks

(2008) David Gfeller et al.   PHYSICAL REVIEW LETTERS