Identification of the protein folding transition state from molecular dynamics trajectories

De novo design of a monomeric three-stranded antiparallel β-sheet

(2010) Eva De Alba et al.   PROTEIN SCIENCE

ETNA: Equilibrium Transitions Network and Arrhenius Equation for Extracting Folding Kinetics from REMD Simulations

(2009) S. Muff et al.   JOURNAL OF PHYSICAL CHEMISTRY B

High Temperature Unfolding Simulations of the TRPZ1 Peptide

(2008) Giovanni Settanni et al.   BIOPHYSICAL JOURNAL

Transition networks for modeling the kinetics of conformational change in macromolecules

(2008) Frank Noé et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

One-Dimensional Barrier-Preserving Free-Energy Projections of a β-sheet Miniprotein: New Insights into the Folding Process

(2008) Sergei V. Krivov et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Coarse Master Equations for Peptide Folding Dynamics†

(2008) Nicolae-Viorel Buchete et al.   JOURNAL OF PHYSICAL CHEMISTRY B

A two-step nucleotide-flipping mechanism enables kinetic discrimination of DNA lesions by AGT

(2008) J. Hu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

 -Helix folding in the presence of structural constraints

(2008) J. A. Ihalainen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Diffusive reaction dynamics on invariant free energy profiles

(2008) S. V. Krivov et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA