Zebra: a web server for bioinformatic analysis of diverse protein families

Bioinformatic analysis of protein families for identification of variable amino acid residues responsible for functional diversity

(2013) Dmitry Suplatov et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

Bioinformatic analysis of alpha/beta-hydrolase fold enzymes reveals subfamily-specific positions responsible for discrimination of amidase and lipase activities

(2012) D. A. Suplatov et al.   PROTEIN ENGINEERING DESIGN & SELECTION

Using the T-Coffee package to build multiple sequence alignments of protein, RNA, DNA sequences and 3D structures

(2011) Jean-Francois Taly et al.   Nature Protocols

Stability of the domain interface contributes towards the catalytic function at the H-site of class alpha glutathione transferase A1-1

(2010) David Balchin et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

Simple is beautiful: a straightforward approach to improve the delineation of true and false positives in PSI-BLAST searches

(2008) M. M. Lee et al.   BIOINFORMATICS

Prediction of protein functional residues from sequence by probability density estimation

(2008) J. D. Fischer et al.   BIOINFORMATICS

Matt: Local Flexibility Aids Protein Multiple Structure Alignment

(2008) Matthew Menke et al.   PLoS Computational Biology