Identification of Two Pentatricopeptide Repeat Genes Required for RNA Editing and Zinc Binding by C-terminal Cytidine Deaminase-like Domains

The E domains of pentatricopeptide repeat proteins from different organelles are not functionally equivalent for RNA editing

(2013) Anne-Laure Chateigner-Boutin et al.   PLANT JOURNAL

Elucidation of the RNA Recognition Code for Pentatricopeptide Repeat Proteins Involved in Organelle RNA Editing in Plants

(2013) Yusuke Yagi et al.   PLoS One

A survey of PPR proteins identifies DYW domains like those of land plant RNA editing factors in diverse eukaryotes

(2013) Mareike Schallenberg-Rüdinger et al.   RNA Biology

Molecular evolution of pentatricopeptide repeat genes reveals truncation in species lacking an editing target and structural domains under distinct selective pressures

(2012) Michael L Hayes et al.   BMC EVOLUTIONARY BIOLOGY

A pentatricopeptide repeat protein acts as a site-specificity factor at multiple RNA editing sites with unrelated cis -acting elements in plastids

(2012) Kenji Okuda et al.   NUCLEIC ACIDS RESEARCH

Two Interacting Proteins Are Necessary for the Editing of the NdhD-1 Site in Arabidopsis Plastids

(2012) C. Boussardon et al.   PLANT CELL

RIP1, a member of an Arabidopsis protein family, interacts with the protein RARE1 and broadly affects RNA editing

(2012) S. Bentolila et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Multiple organellar RNA editing factor (MORF) family proteins are required for RNA editing in mitochondria and plastids of plants

(2012) M. Takenaka et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Combinatorial Amino Acid Code for RNA Recognition by Pentatricopeptide Repeat Proteins

(2012) Alice Barkan et al.   PLoS Genetics

The Pentatricopeptide Repeat Protein OTP87 Is Essential for RNA Editing ofnad7andatp1Transcripts inArabidopsisMitochondria

(2011) Kamel Hammani et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Secondary interactions involving zinc-bound ligands: Roles in structural stabilization and macromolecular interactions

(2011) Frances Namuswe et al.   JOURNAL OF INORGANIC BIOCHEMISTRY

New perspectives of zinc coordination environments in proteins

(2011) Wolfgang Maret   JOURNAL OF INORGANIC BIOCHEMISTRY

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Evolution of the deaminase fold and multiple origins of eukaryotic editing and mutagenic nucleic acid deaminases from bacterial toxin systems

(2011) Lakshminarayan M. Iyer et al.   NUCLEIC ACIDS RESEARCH

The E-Class PPR Protein MEF3 of Arabidopsis thaliana Can Also Function in Mitochondrial RNA Editing With an Additional DYW Domain

(2011) D. Verbitskiy et al.   PLANT AND CELL PHYSIOLOGY

Plant-type mitochondrial RNA editing in the protist Naegleria gruberi

(2011) M. Rudinger et al.   RNA

DYW-type PPR proteins in a heterolobosean protist: Plant RNA editing factors involved in an ancient horizontal gene transfer?

(2010) Volker Knoop et al.   FEBS LETTERS

Reverse Genetic Screening Identifies Five E-class PPR Proteins Involved in RNA Editing in Mitochondria ofArabidopsis thaliana

(2010) Mizuki Takenaka et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Editing of accD and ndhF chloroplast transcripts is partially affected in the Arabidopsis vanilla cream1 mutant

(2010) Ching-Chih Tseng et al.   PLANT MOLECULAR BIOLOGY

Pentatricopeptide Repeat Proteins with the DYW Motif Have Distinct Molecular Functions in RNA Editing and RNA Cleavage in Arabidopsis Chloroplasts

(2009) K. Okuda et al.   PLANT CELL

A Study of New Arabidopsis Chloroplast RNA Editing Mutants Reveals General Features of Editing Factors and Their Target Sites

(2009) K. Hammani et al.   PLANT CELL

The pentatricopeptide repeat protein OTP82 is required for RNA editing of plastid ndhB and ndhG transcripts

(2009) Kenji Okuda et al.   PLANT JOURNAL

AtECB2, a pentatricopeptide repeat protein, is required for chloroplast transcriptaccDRNA editing and early chloroplast biogenesis inArabidopsis thaliana

(2009) Qing-Bo Yu et al.   PLANT JOURNAL

LPA66 Is Required for Editing psbF Chloroplast Transcripts in Arabidopsis

(2009) W. Cai et al.   PLANT PHYSIOLOGY

A comparative genomics approach identifies a PPR-DYW protein that is essential for C-to-U editing of the Arabidopsis chloroplast accD transcript

(2009) J. C. Robbins et al.   RNA

Structural basis for specific cleavage of Lys 63-linked polyubiquitin chains

(2008) Yusuke Sato et al.   NATURE

Vein patterning screens and the defectively organized tributaries mutants in Arabidopsis thaliana

(2008) Jalean Joyanne Petricka et al.   PLANT JOURNAL

CLB19, a pentatricopeptide repeat protein required for editing ofrpoAandclpPchloroplast transcripts

(2008) Anne-Laure Chateigner-Boutin et al.   PLANT JOURNAL

The Arabidopsis gene YS1 encoding a DYW protein is required for editing of rpoB transcripts and the rapid development of chloroplasts during early growth

(2008) Wenbin Zhou et al.   PLANT JOURNAL

Genetic Architecture of Mitochondrial Editing in Arabidopsis thaliana

(2007) S. Bentolila et al.   GENETICS