Climate niche conservatism and complex topography illuminate the cryptic diversification of Asian shrew-like moles

Phylogeny and systematic revision of the genus Typhlomys (Rodentia, Platacanthomyidae), with description of a new species

(2017) Feng Cheng et al.   JOURNAL OF MAMMALOGY

Uplift-driven diversification in the Hengduan Mountains, a temperate biodiversity hotspot

(2017) Yaowu Xing et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Multispecies coalescent delimits structure, not species

(2017) Jeet Sukumaran et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sino-Himalayan mountains act as cradles of diversity and immigration centres in the diversification of parrotbills (Paradoxornithidae)

(2016) Yang Liu et al.   JOURNAL OF BIOGEOGRAPHY

Available data point to a 4-km-high Tibetan Plateau by 40 Ma, but 100 molecular-clock papers have linked supposed recent uplift to young node ages

(2016) Susanne S. Renner   JOURNAL OF BIOGEOGRAPHY

Glacial refugia, recolonization patterns and diversification forces in Alpine-endemicMegabunusharvestmen

(2016) Gregor A. Wachter et al.   MOLECULAR ECOLOGY

Species diversification and phylogeographical patterns of birds in response to the uplift of the Qinghai-Tibet Plateau and Quaternary glaciations

(2016) Fumin Lei et al.   Current Zoology

ASTRAL-II: coalescent-based species tree estimation with many hundreds of taxa and thousands of genes

(2015) Siavash Mirarab et al.   BIOINFORMATICS

Interglacial refugia preserved high genetic diversity of the Chinese mole shrew in the mountains of southwest China

(2015) K He et al.   HEREDITY

The potential drivers in forming avian biodiversity hotspots in the East Himalaya Mountains of Southwest China

(2015) Fumin LEI et al.   Integrative Zoology

Evolutionary history of the subnival flora of the Himalaya-Hengduan Mountains: first insights from comparative phylogeography of four perennial herbs

(2015) Dong Luo et al.   JOURNAL OF BIOGEOGRAPHY

Sky island diversification meets the multispecies coalescent - divergence in the spruce-fir moss spider (Microhexura montivaga,Araneae, Mygalomorphae) on the highest peaks of southern Appalachia

(2015) Marshal Hedin et al.   MOLECULAR ECOLOGY

Molecular phylogenetics and phylogeographic structure of Sorex bedfordiae based on mitochondrial and nuclear DNA sequences

(2015) Shunde Chen et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Phylogenetic niche conservatism and the evolutionary basis of ecological speciation

(2014) R. Alexander Pyron et al.   BIOLOGICAL REVIEWS

Sky islands of southwest China. I: an overview of phylogeographic patterns

(2014) Kai He et al.   CHINESE SCIENCE BULLETIN

Of peaks and valleys: testing the roles of orogeny and habitat heterogeneity in driving allopatry in mid-elevation frogs (Aromobatidae:Rheobates) of the northern Andes

(2014) Astrid Muñoz-Ortiz et al.   JOURNAL OF BIOGEOGRAPHY

The influence of geological events on the endemism of East Asian birds studied through comparative phylogeography

(2014) Yanhua Qu et al.   JOURNAL OF BIOGEOGRAPHY

Pliocene intraspecific divergence and Plio-Pleistocene range expansions withinPicea likiangensis(Lijiang spruce), a dominant forest tree of the Qinghai-Tibet Plateau

(2014) Long Li et al.   MOLECULAR ECOLOGY

The drivers of tropical speciation

(2014) Brian Tilston Smith et al.   NATURE

Model Selection in Historical Biogeography Reveals that Founder-Event Speciation Is a Crucial Process in Island Clades

(2014) Nicholas J. Matzke   SYSTEMATIC BIOLOGY

SDMtoolbox: a python-based GIS toolkit for landscape genetic, biogeographic and species distribution model analyses

(2014) Jason L. Brown   Methods in Ecology and Evolution

Multilocus phylogeny and cryptic diversity in Asian shrew-like moles (Uropsilus, Talpidae): implications for taxonomy and conservation

(2013) Tao Wan et al.   BMC EVOLUTIONARY BIOLOGY

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Long-term isolation and stability explain high genetic diversity in the Eastern Himalaya

(2013) Yanhua Qu et al.   MOLECULAR ECOLOGY

Uncovering cryptic diversity and refugial persistence among small mammal lineages across the Eastern Afromontane biodiversity hotspot

(2013) Terrence C. Demos et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Biodiversity from mountain building

(2013) Carina Hoorn et al.   Nature Geoscience

Geological and ecological factors drive cryptic speciation of yews in a biodiversity hotspot

(2013) Jie Liu et al.   NEW PHYTOLOGIST

New Metrics for Comparison of Taxonomies Reveal Striking Discrepancies among Species Delimitation Methods in Madascincus Lizards

(2013) Aurélien Miralles et al.   PLoS One

Floral diversity and community structure inPedicularis(Orobanchaceae)

(2012) Deren A. R. Eaton et al.   ECOLOGY

Glacial expansion and diversification of an East Asian montane bird, the green-backed tit (Parus monticolus)

(2012) Wenjuan Wang et al.   JOURNAL OF BIOGEOGRAPHY

Improving the Accuracy of Demographic and Molecular Clock Model Comparison While Accommodating Phylogenetic Uncertainty

(2012) Guy Baele et al.   MOLECULAR BIOLOGY AND EVOLUTION

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses

(2012) R. Lanfear et al.   MOLECULAR BIOLOGY AND EVOLUTION

Coalescence patterns of endemic Tibetan species of stream salamanders (Hynobiidae:Batrachuperus)

(2012) BIN LU et al.   MOLECULAR ECOLOGY

Geological events play a larger role than Pleistocene climatic fluctuations in driving the genetic structure ofQuasipaa boulengeri(Anura: Dicroglossidae)

(2012) Fang Yan et al.   MOLECULAR ECOLOGY

Two-phase growth of high topography in eastern Tibet during the Cenozoic

(2012) E. Wang et al.   Nature Geoscience

Phylogeographic Study of Apodemus ilex (Rodentia: Muridae) in Southwest China

(2012) Qi Liu et al.   PLoS One

Great Genetic Differentiation among Populations of Meconopsis integrifolia and Its Implication for Plant Speciation in the Qinghai-Tibetan Plateau

(2012) Fu-Sheng Yang et al.   PLoS One

Interpreting the Process behind Endemism in China by Integrating the Phylogeography and Ecological Niche Models of the Stachyridopsis ruficeps

(2012) Huatao Liu et al.   PLoS One

Coalescent-based species delimitation in an integrative taxonomy

(2012) Matthew K. Fujita et al.   TRENDS IN ECOLOGY & EVOLUTION

The Role of Mountain Ranges in the Diversification of Birds

(2011) Jon Fjeldså et al.   Annual Review of Ecology Evolution and Systematics

SPREAD: spatial phylogenetic reconstruction of evolutionary dynamics

(2011) F. Bielejec et al.   BIOINFORMATICS

Molecular evidence for Pleistocene refugia at the eastern edge of the Tibetan Plateau

(2011) XIANGJIANG ZHAN et al.   MOLECULAR ECOLOGY

ABGD, Automatic Barcode Gap Discovery for primary species delimitation

(2011) N. PUILLANDRE et al.   MOLECULAR ECOLOGY

Integrating statistical genetic and geospatial methods brings new power to phylogeography

(2011) Lauren M. Chan et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Cryptic biodiversity loss linked to global climate change

(2011) M. Bálint et al.   Nature Climate Change

Performance of criteria for selecting evolutionary models in phylogenetics: a comprehensive study based on simulated datasets

(2010) Arong Luo et al.   BMC EVOLUTIONARY BIOLOGY

A statistical explanation of MaxEnt for ecologists

(2010) Jane Elith et al.   DIVERSITY AND DISTRIBUTIONS

Phylogeography Takes a Relaxed Random Walk in Continuous Space and Time

(2010) P. Lemey et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genealogy and palaeodrainage basins in Yunnan Province: phylogeography of the Yunnan spiny frog, Nanorana yunnanensis (Dicroglossidae)

(2010) DONG-RU ZHANG et al.   MOLECULAR ECOLOGY

Bayesian species delimitation using multilocus sequence data

(2010) Z. Yang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Amazonia Through Time: Andean Uplift, Climate Change, Landscape Evolution, and Biodiversity

(2010) C. Hoorn et al.   SCIENCE

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

(2009) P. Librado et al.   BIOINFORMATICS

Inferring weak population structure with the assistance of sample group information

(2009) MELISSA J. HUBISZ et al.   Molecular Ecology Resources

Tracing the impact of the Andean uplift on Neotropical plant evolution

(2009) A. Antonelli et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Stability Predicts Genetic Diversity in the Brazilian Atlantic Forest Hotspot

(2009) A. C. Carnaval et al.   SCIENCE

Evidence for Ecological Speciation and Its Alternative

(2009) D. Schluter   SCIENCE

Modeling of species distributions with Maxent: new extensions and a comprehensive evaluation

(2008) Steven J. Phillips et al.   ECOGRAPHY

ENVIRONMENTAL NICHE EQUIVALENCY VERSUS CONSERVATISM: QUANTITATIVE APPROACHES TO NICHE EVOLUTION

(2008) Dan L. Warren et al.   EVOLUTION

The Genetic Basis of Phenotypic Convergence in Beach Mice: Similar Pigment Patterns but Different Genes

(2008) C. C. Steiner et al.   MOLECULAR BIOLOGY AND EVOLUTION

Maximum Likelihood Inference of Geographic Range Evolution by Dispersal, Local Extinction, and Cladogenesis

(2008) Richard H. Ree et al.   SYSTEMATIC BIOLOGY

A Rapid Bootstrap Algorithm for the RAxML Web Servers

(2008) Alexandros Stamatakis et al.   SYSTEMATIC BIOLOGY