Genomic, Proteomic, and Biochemical Analysis of the Organohalide Respiratory Pathway in Desulfitobacterium dehalogenans

Insights into organohalide respiration and the versatile catabolism ofSulfurospirillum multivoransgained from comparative genomics and physiological studies

(2014) Tobias Goris et al.   ENVIRONMENTAL MICROBIOLOGY

Selenite reduction by Shewanella oneidensis MR-1 is mediated by fumarate reductase in periplasm

(2014) Dao-Bo Li et al.   Scientific Reports

Identification of a Hotdog Fold Thioesterase Involved in the Biosynthesis of Menaquinone in Escherichia coli

(2013) M. Chen et al.   JOURNAL OF BACTERIOLOGY

The restricted metabolism of the obligate organohalide respiring bacterium Dehalobacter restrictus: lessons from tiered functional genomics

(2013) A. Rupakula et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Overview of organohalide-respiring bacteria and a proposal for a classification system for reductive dehalogenases

(2013) L. A. Hug et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Impact of Vitamin B12on Formation of the Tetrachloroethene Reductive Dehalogenase in Desulfitobacterium hafniense Strain Y51

(2012) Anika Reinhold et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Mind the gap: cytochrome interactions reveal electron pathways across the periplasm ofShewanella oneidensisMR-1

(2012) Bruno M. Fonseca et al.   BIOCHEMICAL JOURNAL

Energy conservation via electron bifurcating ferredoxin reduction and proton/Na+ translocating ferredoxin oxidation

(2012) Wolfgang Buckel et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Diversity and evolution of bioenergetic systems involved in microbial nitrogen compound transformations

(2012) Jörg Simon et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Distribution of nitrogen fixation and nitrogenase-like sequences amongst microbial genomes

(2012) Patricia C Dos Santos et al.   BMC GENOMICS

Genome sequence of Desulfitobacterium hafniense DCB-2, a Gram-positive anaerobe capable of dehalogenation and metal reduction

(2012) Sang-Hoon Kim et al.   BMC MICROBIOLOGY

Comparative analysis of the N-terminal sequence of Geobacter sulfurreducens AM-1 methacrylate reductase

(2012) O. V. Arkhipova et al.   MICROBIOLOGY

Physiological Adaptation of Desulfitobacterium hafniense Strain TCE1 to Tetrachloroethene Respiration

(2011) Laure Prat et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Global transcriptome analysis of the tetrachloroethene-dechlorinating bacterium Desulfitobacterium hafniense Y51 in the presence of various electron donors and terminal electron acceptors

(2011) Xue Peng et al.   JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY

Identification of Chromatophore Membrane Protein Complexes Formed under Different Nitrogen Availability Conditions inRhodospirillum rubrum

(2011) Tiago Toscano Selao et al.   JOURNAL OF PROTEOME RESEARCH

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

Combined prediction of Tat and Sec signal peptides with hidden Markov models

(2010) Pantelis G. Bagos et al.   BIOINFORMATICS

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

Advances in shotgun proteomics and the analysis of membrane proteomes

(2010) Joshua M. Gilmore et al.   Journal of Proteomics

Nitrogen Fixation and Hydrogen Metabolism in Cyanobacteria

(2010) H. Bothe et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes

(2010) Amrita Pati et al.   NATURE METHODS

Exploiting the ecogenomics toolbox for environmental diagnostics of organohalide-respiring bacteria

(2010) Farai Maphosa et al.   TRENDS IN BIOTECHNOLOGY

Enzymology of the Wood-Ljungdahl Pathway of Acetogenesis

(2008) Stephen W. Ragsdale   Annals of the New York Academy of Sciences

The organisation of proton motive and non-proton motive redox loops in prokaryotic respiratory systems

(2008) Jörg Simon et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Biochemical and genetic bases of dehalorespiration

(2008) Taiki Futagami et al.   CHEMICAL RECORD

Characterization of the NapGH quinol dehydrogenase complex involved inWolinella succinogenesnitrate respiration

(2008) Melanie Kern et al.   MOLECULAR MICROBIOLOGY

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

(2008) Jürgen Cox et al.   NATURE BIOTECHNOLOGY

SMART 6: recent updates and new developments

(2008) I. Letunic et al.   NUCLEIC ACIDS RESEARCH