Identification of the Alternative Sigma Factor SigX Regulon and Its Implications for Pseudomonas aeruginosa Pathogenicity

Recycling of Peptidyl-tRNAs by Peptidyl-tRNA Hydrolase Counteracts Azithromycin-Mediated Effects on Pseudomonas aeruginosa

(2013) Julia Gödeke et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

The Mycobacterium tuberculosis regulatory network and hypoxia

(2013) James E. Galagan et al.   NATURE

Convergent Evolution of Hyperswarming Leads to Impaired Biofilm Formation in Pathogenic Bacteria

(2013) Dave van Ditmarsch et al.   Cell Reports

You’ve come a long way: c-di-GMP signaling

(2012) Holger Sondermann et al.   CURRENT OPINION IN MICROBIOLOGY

Extra cytoplasmic function σ factor activation

(2012) Theresa D Ho et al.   CURRENT OPINION IN MICROBIOLOGY

Transcription of the oprF Gene of Pseudomonas aeruginosa Is Dependent Mainly on the SigX Sigma Factor and Is Sucrose Induced

(2012) E. Bouffartigues et al.   JOURNAL OF BACTERIOLOGY

ChIP-seq and transcriptome analysis of the OmpR regulon ofSalmonella entericaserovars Typhi and Typhimurium reveals accessory genes implicated in host colonization

(2012) Timothy T. Perkins et al.   MOLECULAR MICROBIOLOGY

Single-tube linear DNA amplification for genome-wide studies using a few thousand cells

(2012) Pattabhiraman Shankaranarayanan et al.   Nature Protocols

The Pseudomonas aeruginosa Transcriptome in Planktonic Cultures and Static Biofilms Using RNA Sequencing

(2012) Andreas Dötsch et al.   PLoS One

The Single-Nucleotide Resolution Transcriptome of Pseudomonas aeruginosa Grown in Body Temperature

(2012) Omri Wurtzel et al.   PLoS Pathogens

Roles of Two Shewanella oneidensis MR-1 Extracellular Endonucleases

(2011) Julia Gödeke et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

FIMO: scanning for occurrences of a given motif

(2011) Charles E. Grant et al.   BIOINFORMATICS

Hepatitis C virus complete life cycle screen for identification of small molecules with pro- or antiviral activity

(2010) Juliane Gentzsch et al.   ANTIVIRAL RESEARCH

Stampy: A statistical algorithm for sensitive and fast mapping of Illumina sequence reads

(2010) G. Lunter et al.   GENOME RESEARCH

A liquid chromatography-coupled tandem mass spectrometry method for quantitation of cyclic di-guanosine monophosphate

(2010) Christian Spangler et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Independent filtering increases detection power for high-throughput experiments

(2010) R. Bourgon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Swarming of Pseudomonas aeruginosa Is Controlled by a Broad Spectrum of Transcriptional Regulators, Including MetR

(2009) A. T. Y. Yeung et al.   JOURNAL OF BACTERIOLOGY

Mouse-Specific Residues of Claudin-1 Limit Hepatitis C Virus Genotype 2a Infection in a Human Hepatocyte Cell Line

(2009) S. Haid et al.   JOURNAL OF VIROLOGY

Global position analysis of thePseudomonas aeruginosaquorum-sensing transcription factor LasR

(2009) Kerrigan B. Gilbert et al.   MOLECULAR MICROBIOLOGY

Principles of c-di-GMP signalling in bacteria

(2009) Regine Hengge   NATURE REVIEWS MICROBIOLOGY

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Swarming of Pseudomonas aeruginosa Is a Complex Adaptation Leading to Increased Production of Virulence Factors and Antibiotic Resistance

(2008) J. Overhage et al.   JOURNAL OF BACTERIOLOGY

Modulation of stress and virulence in Listeria monocytogenes

(2008) Soraya Chaturongakul et al.   TRENDS IN MICROBIOLOGY

Model-based Analysis of ChIP-Seq (MACS)

(2008) Yong Zhang et al.   GENOME BIOLOGY

Signaling mechanisms for activation of extracytoplasmic function (ECF) sigma factors

(2007) Benjamin E. Brooks et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES