Mapping native disulfide bonds at a proteome scale

pLogo: a probabilistic approach to visualizing sequence motifs

(2013) Joseph P O'Shea et al.   NATURE METHODS

Mass spectrometry-based strategies for protein disulfide bond identification

(2013) Pei Lun Tsai et al.   REVIEWS IN ANALYTICAL CHEMISTRY

Ubiquitin-Like Proteins

(2012) Annemarthe G. van der Veen et al.   Annual Review of Biochemistry

Post-Translational Control of Protein Function by Disulfide Bond Cleavage

(2012) Kristina M. Cook et al.   ANTIOXIDANTS & REDOX SIGNALING

Why do bacteria use so many enzymes to scavenge hydrogen peroxide?

(2012) Surabhi Mishra et al.   ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS

Identification of cross-linked peptides from complex samples

(2012) Bing Yang et al.   NATURE METHODS

STRING v9.1: protein-protein interaction networks, with increased coverage and integration

(2012) Andrea Franceschini et al.   NUCLEIC ACIDS RESEARCH

StavroX—A Software for Analyzing Crosslinked Products in Protein Interaction Studies

(2011) Michael Götze et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

pParse: A method for accurate determination of monoisotopic peaks in high-resolution mass spectra

(2011) Zuo-F ei Yuan et al.   PROTEOMICS

How Proteins Form Disulfide Bonds

(2010) Matthieu Depuydt et al.   ANTIOXIDANTS & REDOX SIGNALING

Cytoscape 2.8: new features for data integration and network visualization

(2010) M. E. Smoot et al.   BIOINFORMATICS

ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks

(2009) Gabriela Bindea et al.   BIOINFORMATICS

Conformational changes in redox pairs of protein structures

(2009) Samuel W. Fan et al.   PROTEIN SCIENCE

Mass Spectrometric Determination of Disulfide Linkages in Recombinant Therapeutic Proteins Using Online LC−MS with Electron-Transfer Dissociation

(2008) Shiaw-Lin Wu et al.   ANALYTICAL CHEMISTRY

Identification and Characterization of Disulfide Bonds in Proteins and Peptides from Tandem MS Data by Use of the MassMatrix MS/MS Search Engine

(2007) Hua Xu et al.   JOURNAL OF PROTEOME RESEARCH