Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism

A far downstream enhancer for murine Bcl11b controls its T-cell specific expression

(2013) L. Li et al.   BLOOD

Prognostic value of human papillomavirus types 16 and 18 DNA physical status in cervical intraepithelial neoplasia

(2013) A. Gradíssimo Oliveira et al.   CLINICAL MICROBIOLOGY AND INFECTION

HIVID: An efficient method to detect HBV integration using low coverage sequencing

(2013) Weiyang Li et al.   GENOMICS

Human papillomavirus and cervical cancer

(2013) Emma J Crosbie et al.   LANCET

Landscape of genomic alterations in cervical carcinomas

(2013) Akinyemi I. Ojesina et al.   NATURE

The haplotype-resolved genome and epigenome of the aneuploid HeLa cancer cell line

(2013) Andrew Adey et al.   NATURE

A genome-wide association study identifies two new cervical cancer susceptibility loci at 4q12 and 17q12

(2013) Yongyong Shi et al.   NATURE GENETICS

Multiplex Identification of Human Papillomavirus 16 DNA Integration Sites in Cervical Carcinomas

(2013) Bo Xu et al.   PLoS One

Human papillomavirus genome variants

(2013) Robert D. Burk et al.   VIROLOGY

Microhomology-Mediated Mechanisms Underlie Non-Recurrent Disease-Causing Microdeletions of the FOXL2 Gene or Its Regulatory Domain

(2013) Hannah Verdin et al.   PLoS Genetics

Loss of gene function as a consequence of human papillomavirus DNA integration

(2012) Martina Schmitz et al.   INTERNATIONAL JOURNAL OF CANCER

Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma

(2012) Wing-Kin Sung et al.   NATURE GENETICS

Non-B DB v2.0: a database of predicted non-B DNA-forming motifs and its associated tools

(2012) Regina Z. Cer et al.   NUCLEIC ACIDS RESEARCH

Non-Random Integration of the HPV Genome in Cervical Cancer

(2012) Martina Schmitz et al.   PLoS One

HPV Genotyping and Site of Viral Integration in Cervical Cancers in Indian Women

(2012) Poulami Das et al.   PLoS One

Human Papillomavirus Mutational Insertion: Specific Marker of Circulating Tumor DNA in Cervical Cancer Patients

(2012) Maura Campitelli et al.   PLoS One

RAF gene fusion breakpoints in pediatric brain tumors are characterized by significant enrichment of sequence microhomology

(2011) A. R. J. Lawson et al.   GENOME RESEARCH

ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data

(2010) K. Wang et al.   NUCLEIC ACIDS RESEARCH

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Human Papillomavirus 16 Load and E2/E6 Ratio in HPV16-Positive Women: Biomarkers for Cervical Intraepithelial Neoplasia >=2 in a Liquid-Based Cytology Setting?

(2009) G. A.V. Boulet et al.   CANCER EPIDEMIOLOGY BIOMARKERS & PREVENTION

The DNA replication FoSTeS/MMBIR mechanism can generate genomic, genic and exonic complex rearrangements in humans

(2009) Feng Zhang et al.   NATURE GENETICS

Characterization of Naturally Occurring HPV16 Integration Sites Isolated from Cervical Keratinocytes under Noncompetitive Conditions

(2008) K. L. Dall et al.   CANCER RESEARCH