Ecophysiology of Thioploca ingrica as revealed by the complete genome sequence supplemented with proteomic evidence

Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads

(2014) Rei Kajitani et al.   GENOME RESEARCH

Phylogenetic and morphologic complexity of giant sulphur bacteria

(2013) Verena Salman et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Mobile Elements in a Single-Filament Orange Guaymas Basin Beggiatoa (“Candidatus Maribeggiatoa”) sp. Draft Genome: Evidence for Genetic Exchange with Cyanobacteria

(2013) Barbara J. MacGregor et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Close association of active nitrifiers withBeggiatoamats covering deep-sea hydrothermal sediments

(2013) Matthias Winkel et al.   ENVIRONMENTAL MICROBIOLOGY

Sulfide oxidation, nitrate respiration, carbon acquisition, and electron transport pathways suggested by the draft genome of a single orange Guaymas Basin Beggiatoa (Cand. Maribeggiatoa) sp. filament

(2013) Barbara J. MacGregor et al.   Marine Genomics

Sulfite oxidation in the purple sulfur bacterium Allochromatium vinosum: identification of SoeABC as a major player and relevance of SoxYZ in the process

(2013) Christiane Dahl et al.   MICROBIOLOGY-SGM

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Nitrogen losses in anoxic marine sediments driven by Thioploca–anammox bacterial consortia

(2013) M. G. Prokopenko et al.   NATURE

Data, information, knowledge and principle: back to metabolism in KEGG

(2013) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Draft Genome Sequence of a Psychrotolerant Sulfur-Oxidizing Bacterium, Sulfuricella denitrificans skB26, and Proteomic Insights into Cold Adaptation

(2012) Tomohiro Watanabe et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Filamentous sulfur-oxidizing bacteria of the genus Thioploca from Lake Tonle Sap in Cambodia

(2012) F Nemoto et al.   AQUATIC MICROBIAL ECOLOGY

The bacterial SoxAX cytochromes

(2012) Ulrike Kappler et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Spatial heterogeneity and underlying geochemistry of phylogenetically diverse orange and white Beggiatoa mats in Guaymas Basin hydrothermal sediments

(2012) Luke J. McKay et al.   DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS

Vacuolar respiration of nitrate coupled to energy conservation in filamentousBeggiatoaceae

(2012) Martin Beutler et al.   ENVIRONMENTAL MICROBIOLOGY

Roseobacter clade bacteria are abundant in coastal sediments and encode a novel combination of sulfur oxidation genes

(2012) Sabine Lenk et al.   ISME Journal

Unusual polyphosphate inclusions observed in a marine Beggiatoa strain

(2011) Jörg Brock et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Diversity of Freshwater Thioploca Species and Their Specific Association with Filamentous Bacteria of the Phylum Chloroflexi

(2011) Fumiko Nemoto et al.   MICROBIAL ECOLOGY

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

A single-cell sequencing approach to the classification of large, vacuolated sulfur bacteria

(2011) Verena Salman et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Sulfide induces phosphate release from polyphosphate in cultures of a marine Beggiatoa strain

(2010) Jörg Brock et al.   ISME Journal

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Colorless sulfur bacteria Thioploca from different sites in Lake Baikal

(2009) T. I. Zemskaya et al.   MICROBIOLOGY

Methylotrophy in Freshwater Beggiatoa alba Strains

(2008) T. Jewell et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

MetaGeneAnnotator: Detecting Species-Specific Patterns of Ribosomal Binding Site for Precise Gene Prediction in Anonymous Prokaryotic and Phage Genomes

(2008) H. Noguchi et al.   DNA RESEARCH