Integrating metagenomic and amplicon databases to resolve the phylogenetic and ecological diversity of the Chlamydiae

Whole-genome sequences of Chlamydia trachomatis directly from clinical samples without culture

(2013) H. M. B. Seth-Smith et al.   GENOME RESEARCH

Metabolic Effectors Secreted by Bacterial Pathogens: Essential Facilitators of Plastid Endosymbiosis?

(2013) Steven G. Ball et al.   PLANT CELL

Prevalent genome streamlining and latitudinal divergence of planktonic bacteria in the surface ocean

(2013) B. K. Swan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Molecular Characterization of “Candidatus Parilichlamydia carangidicola,” a Novel Chlamydia-Like Epitheliocystis Agent in Yellowtail Kingfish, Seriola lalandi (Valenciennes), and the Proposal of a New Family, “Candidatus Parilichlamydiaceae” fam. nov. (Order Chlamydiales)

(2012) M. C. Stride et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes

(2012) Elmar Pruesse et al.   BIOINFORMATICS

Single cell genomics: an individual look at microbes

(2012) Ramunas Stepanauskas   CURRENT OPINION IN MICROBIOLOGY

Analysis of Genome Content Evolution in PVC Bacterial Super-Phylum: Assessment of Candidate Genes Associated with Cellular Organization and Lifestyle

(2012) Olga K. Kamneva et al.   Genome Biology and Evolution

High abundance of novel environmental chlamydiae in a Tyrrhenian coastal lake (Lago di Paola, Italy)

(2012) Ilaria Pizzetti et al.   Environmental Microbiology Reports

Parachlamydia and Rhabdochlamydia: Emerging Agents of Community-Acquired Respiratory Infections in Children

(2011) F. Lamoth et al.   CLINICAL INFECTIOUS DISEASES

Single cell Raman spectroscopy for cell sorting and imaging

(2011) Mengqiu Li et al.   CURRENT OPINION IN BIOTECHNOLOGY

Amoebal host range, host-free survival and disinfection susceptibility of environmentalChlamydiaeas compared toChlamydia trachomatis

(2011) Céline Coulon et al.   FEMS IMMUNOLOGY AND MEDICAL MICROBIOLOGY

The genomic standards consortium: bringing standards to life for microbial ecology

(2011) Pelin Yilmaz et al.   ISME Journal

Unity in Variety--The Pan-Genome of the Chlamydiae

(2011) A. Collingro et al.   MOLECULAR BIOLOGY AND EVOLUTION

The sequence read archive: explosive growth of sequencing data

(2011) Y. Kodama et al.   NUCLEIC ACIDS RESEARCH

IMG: the integrated microbial genomes database and comparative analysis system

(2011) V. M. Markowitz et al.   NUCLEIC ACIDS RESEARCH

Chlamydophila pneumoniae

(2010) Almudena Burillo et al.   INFECTIOUS DISEASE CLINICS OF NORTH AMERICA

Biodiversity of amoebae and amoeba-associated bacteria in water treatment plants

(2010) Daniele Corsaro et al.   INTERNATIONAL JOURNAL OF HYGIENE AND ENVIRONMENTAL HEALTH

An integrative study of a meromictic lake ecosystem in Antarctica

(2010) Federico M Lauro et al.   ISME Journal

The Future of microbial metagenomics (or is ignorance bliss?)

(2010) Jack A Gilbert et al.   ISME Journal

Single-cell genomics reveals the lifestyle of Poribacteria, a candidate phylum symbiotically associated with marine sponges

(2010) Alexander Siegl et al.   ISME Journal

Evaluation of different partial 16S rRNA gene sequence regions for phylogenetic analysis of microbiomes

(2010) Minseok Kim et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Host range of obligate intracellular bacterium Parachlamydia acanthamoebae

(2010) Yasuhiro Hayashi et al.   MICROBIOLOGY AND IMMUNOLOGY

Raman microspectroscopy reveals long-term extracellular activity of chlamydiae

(2010) Susanne Haider et al.   MOLECULAR MICROBIOLOGY

Community cyberinfrastructure for Advanced Microbial Ecology Research and Analysis: the CAMERA resource

(2010) S. Sun et al.   NUCLEIC ACIDS RESEARCH

Single cell analysis: the new frontier in ‘omics’

(2010) Daojing Wang et al.   TRENDS IN BIOTECHNOLOGY

Epidemiology and control of trachoma: systematic review

(2010) Victor H. Hu et al.   TROPICAL MEDICINE & INTERNATIONAL HEALTH

Meeting Report: “Metagenomics, Metadata and Meta-analysis” (M3) Workshop at the Pacific Symposium on Biocomputing 2010

(2010) Lynette Hirschman et al.   Standards in Genomic Sciences

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Genital Chlamydia trachomatis infections

(2009) C. Bébéar et al.   CLINICAL MICROBIOLOGY AND INFECTION

ESPRIT: estimating species richness using large collections of 16S rRNA pyrosequences

(2009) Yijun Sun et al.   NUCLEIC ACIDS RESEARCH

SIMAP—a comprehensive database of pre-calculated protein sequence similarities, domains, annotations and clusters

(2009) Thomas Rattei et al.   NUCLEIC ACIDS RESEARCH

Assembling the Marine Metagenome, One Cell at a Time

(2009) Tanja Woyke et al.   PLoS One

Detection of Chlamydiae from freshwater environments by PCR, amoeba coculture and mixed coculture

(2009) Daniele Corsaro et al.   RESEARCH IN MICROBIOLOGY

Chlamydiae as Symbionts in Eukaryotes

(2008) Matthias Horn   Annual Review of Microbiology

NovelChlamydialesstrains isolated from a water treatment plant

(2008) Daniele Corsaro et al.   ENVIRONMENTAL MICROBIOLOGY

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

(2008) J. R. Cole et al.   NUCLEIC ACIDS RESEARCH

Exploring Microbial Diversity and Taxonomy Using SSU rRNA Hypervariable Tag Sequencing

(2008) Susan M. Huse et al.   PLoS Genetics