Article
Microbiology
Hyosun Lee, Dhiraj Kumar Chaudhary, Oung Bin Lim, Dong-Uk Kim
Summary: A novel bacterial strain S3N08(T) was isolated from agricultural soil, which showed white color, rod-shaped morphology and motility. It belonged to the genus Paenibacillus and had the closest relative of Paenibacillus periandrae PM10(T) with 95.6% 16S rRNA gene sequence similarity.
ARCHIVES OF MICROBIOLOGY
(2023)
Article
Microbiology
Yan-Qing Duan, Xing-Kui Zhou, Neeli Habib, Shi-Qiang Gao, Li-Min Dong, Xiao-Fei Liu, Yang-Mei Shi, Wen-Jun Li, Gang Du
Summary: Strain W712(T) was isolated from rhizosphere soil of Nicotiana tabacum L. collected from Kunming, south-west China. Based on its phenotypic and genotypic characteristics, it represents a novel genomic species, named Azospirillum tabaci sp. nov.
ARCHIVES OF MICROBIOLOGY
(2022)
Article
Microbiology
Ze-Shen Liu, Ke-Huan Wang, Man Cai, Mei-Ling Yang, Xiao-Kang Wang, Hong-Lin Ma, Yi-Han Yuan, Lin-Huan Wu, De-Feng Li, Shuang-Jiang Liu
Summary: This study isolated and cultivated five unknown bacterial strains from polluted soil and conducted a taxonomic research, identifying them as new species. These bacteria showed resistance to heavy metals and the ability to metabolize aromatic compounds, indicating their adaptation to polluted soil environments.
FRONTIERS IN MICROBIOLOGY
(2023)
Article
Microbiology
Minji Bang, Myung Kyum Kim, Hee-Young Jung
Summary: Two novel bacterial strains, BT175(T) and BT728(T), belonging to the genus Hymenobacter, were isolated from soil in the Republic of Korea. They were found to possess distinct molecular and biological characteristics.
ARCHIVES OF MICROBIOLOGY
(2022)
Article
Biodiversity Conservation
Nhan Le Thi Tuyet, Jaisoo Kim
Summary: A Gram-negative strain, RN2-1(T), was isolated from a Korean forest soil sample. It is characterized as aerobic, oxidase-positive, catalase-negative, non-motile, oval/rod-shaped, and can grow in a wide pH and temperature range. The strain belongs to a novel genus, Limobrevibacterium gyesilva gen. nov., sp. nov., and is closely related to Rhodovastum atsumiense G2-11(T). The whole genome analysis and phenotypic data of strain RN2-1(T) support its distinctive phylogenetic position.
Article
Microbiology
Chung Mi Kim, Ji Won Jeong, Dong Hyeon Lee, Seung Bum Kim
Summary: Two novel species of Pseudomonas, named Pseudomonas guryensis and Pseudomonas ullengensis, were isolated from soil, showing distinct differences from other related species despite high similarities.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
(2021)
Article
Microbiology
Lena Schaffert, Matthias Ruwe, Johanna Milse, Katharina Hanuschka, Vera Ortseifen, Julian Droste, David Brandt, Laura Schluter, Yvonne Kutter, Svenja Vinke, Prisca Viehofer, Lucas Jacob, Nils-Christian Lubke, Eva Schulte-Berndt, Carsten Hain, Marten Linder, Pascal Schmidt, Lars Wollenschlager, Tobias Luttermann, Eric Thieme, Julia Hassa, Markus Haak, Manuel Wittchen, Almut Mentz, Marcus Persicke, Tobias Busche, Christian Ruckert
Summary: Three novel corynebacterial species were isolated from soil in Germany, characterized by their coccoid or irregular rod-shaped morphology and unique genetic structure. They were named Corynebacterium kalinowskii sp. nov., Corynebacterium comes sp. nov., and Corynebacterium occultum sp. nov. based on their phenotypic and genotypic characteristics.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
(2021)
Article
Microbiology
Xue-Mei Chen, De-Feng An, Si-Rong He, Shao-Juan Yang, Zu-Zhen Yang, Lian-Shuang Xiong, Gui-Ding Li, Ming-Guo Jiang, Cheng-Lin Jiang, Yi Jiang
Summary: A Gram-negative coccobacillus strain, YIM 103518(T), was isolated from wild elephant feces in Xishuangbanna, Yunnan Province, West China. It was characterized as strictly aerobic, non-motile, catalase-positive and oxidase-negative. The strain belonged to the genus Acinetobacter and represented a novel species, Acinetobacter faecalis sp. nov., based on phenotypic, chemotaxonomic and phylogenetic analyses. The type strain is YIM 103518(T) (=CCTCC AB 2019201(T) = NBRC 114057(T)).
CURRENT MICROBIOLOGY
(2023)
Article
Microbiology
Kyeong Ryeol Kim, Kyung Hyun Kim, Shehzad Abid Khan, Hyung Min Kim, Dong Min Han, Che Ok Jeon
Summary: Two Gram-stain negative, yellow-pigmented, and mesophilic bacteria strains R7(T) and R19(T) isolated from sandy and forest soil in South Korea exhibited specific characteristics such as growth conditions, major cellular fatty acids, and enzymatic activities.
JOURNAL OF MICROBIOLOGY
(2021)
Article
Microbiology
Daniel Maddock, Helene Kile, Sandra Denman, Dawn Arnold, Carrie Brady
Summary: This study investigates the bacterial populations in environmental samples and identifies several strains belonging to the order Enterobacterales. Three novel species of the genus Scandinavium were described, and the descriptions of the genus and the type species were emended.
FRONTIERS IN MICROBIOLOGY
(2022)
Article
Microbiology
Xianjiao Zhang, Guang-Da Feng, Xiangling Zhen, Yulian Zhang, Xiaoqin Deng, Honghui Zhu, Qing Yao
Summary: Two novel species of the genus Microvirga, Microvirga terricola sp. nov. (type strain c23 x 22(T) = GDMCC 1.1700(T) = KCTC 62432(T)) and Microvirga solisilvae sp. nov. (type strain sex2(T) = GDMCC 1.1651(T) = KACC 21311(T)), were isolated from forest soil in Guangdong Province and Hainan Province, China, respectively. They showed distinct morphological, genetic, and chemotaxonomic characteristics, and phylogenetic analysis supported their placement within the genus Microvirga.
ARCHIVES OF MICROBIOLOGY
(2022)
Article
Biotechnology & Applied Microbiology
Shehzad Abid Khan, Hyung Min Kim, Ju Hye Baek, Hye Su Jung, Che Ok Jeon
Summary: Two novel species of the genus Ramlibacter, named Ramlibacter terrae sp. nov. and Ramlibacter montanisoli sp. nov., were isolated from soil in South Korea. These strains have distinct cellular characteristics and DNA composition, forming phylogenic lineages different from other Ramlibacter type strains.
JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY
(2021)
Article
Microbiology
Catharine R. Carlin, Jingqiu Liao, Dan Weller, Xiaodong Guo, Renato Orsi, Martin Wiedmann
Summary: A total of 27 Listeria isolates were obtained from soil samples in the contiguous United States and an agricultural water sample in New York, which could not be classified to the species level. Based on whole-genome sequence analysis, these 27 isolates form five distinct clusters, each representing a novel species with <95% similarity to any currently described Listeria species. Of the five novel species, three cluster with the Listeria sensu stricto clade and two cluster with sensu lato. The study also identified two proposed novel sensu lato species.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
(2021)
Article
Microbiology
Selma Vieira, Katharina J. Huber, Meina Neumann-Schaal, Alicia Geppert, Manja Luckner, Gerhard Wanner, Jorg Overmann
Summary: The two novel species Usitatibacter rugosus sp. nov and Usitatibacter palustris sp. nov, belonging to the new genus Usitatibacter gen. nov, together form the new family Usitatibacteraceae fam. nov.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
(2021)
Article
Microbiology
Hye Jeong Kang, Min-Kyeong Kim, Su Gwon Roh, Seung Bum Kim
Summary: The bacterium strain MMS17-SY002(T) was isolated from island soil, belonging to the genus Muriicola in the family Flavobacteriaceae, and identified as a novel species named Muriicola soli sp. nov. It exhibits specific growth conditions and biochemical activities that distinguish it from related species.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
(2021)
Article
Microbiology
Shih-Yao Lin, Asif Hameed, Kai-Yeh Chiu, You-Cheng Liu, Yi-Han Hsu, Wei-An Lai, Chiu-Chung Young
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
(2017)
Article
Genetics & Heredity
Asif Hameed, Mariyam Shahina, Hsin-Chieh Huang, Wei-An Lai, Shih-Yao Lin, Paul Stothard, Chiu-Chung Young
Article
Microbiology
Shih-Yao Lin, Asif Hameed, Hsin- Huang, Chiu-Chung Young
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
(2020)
Article
Microbiology
Asif Hameed, Wei-An Lai, Mariyam Shahina, Paul Stothard, Li-Sen Young, Shih-Yao Lin, Kandikere Ramaiah Sridhar, Chiu-Chung Young
FEMS MICROBIOLOGY ECOLOGY
(2020)
Article
Microbiology
Shih-Yao Lin, Wen-Ming Chen, Asif Hameed, Guan-Hua Huang, Mei-Hua Hung, Chiu-Chung Young
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
(2020)
Article
Microbiology
Shih-Yao Lin, Wen-Ming Chen, Guan-Hua Huang, Asif Hameed, Chun-Tse Chang, Chia-Fang Tsai, Chiu-Chung Young
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
(2020)
Article
Microbiology
Shih-Yao Lin, Chia-Fang Tsai, Asif Hameed, Chiu-Chung Young
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
(2020)
Article
Microbiology
Shih-Yao Lin, Chia-Fang Tsai, Asif Hameed, Chiu-Chung Young
Summary: In this study, a polyphasic taxonomic approach was used to characterize a Gram-stain-positive bacterium isolated from soil in a maize field in Taiwan, which was named Aeromicrobium terrae. Analyses based on phylogeny, phenotypic traits, chemotaxonomic characteristics, 16S rRNA gene sequences, and ANI values supported the proposal of this bacterium as a novel species within the genus Aeromicrobium.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
(2021)
Article
Microbiology
Shih-Yao Lin, Chia-Fang Tsai, Asif Hameed, Yu-Shan Tang, Chiu- Chung Young
Summary: A polyphasic taxonomic approach was used to characterize a novel species, Devosia faecipullorum sp. nov., isolated from poultry manure in Taiwan. The strain CC-YST696T showed distinct phylogenetic, phenotypic and chemotaxonomic traits compared to other related species. This study provides valuable insights into the microbial diversity in poultry manure and highlights the importance of studying antibiotic and toxic compound resistance in environmental bacteria.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
(2021)
Article
Microbiology
Shih-Yao Lin, Asif Hameed, Chia-Fang Tsai, Chiu-Chung Young
Summary: A Gram-stain-negative bacterium named Vineibacter terrae gen. nov., sp. nov. was isolated from vineyard soil in Taiwan. This bacterium is aerobic, non-motile, and capable of reducing nitrate, with optimal growth conditions at 30 degrees C and pH 7, belonging to the family Rhodospirillaceae.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
(2021)
Article
Microbiology
Shih-Yao Lin, Asif Hameed, Chia-Fang Tsai, Yu-Shan Tang, Chiu-Chung Young
Summary: This study characterized a novel bacterium isolated from poultry manure and named it Pusillimonas faecipullorum sp. nov. It showed distinct phylogenetic, phenotypic, and chemotaxonomic traits, making it a new species in the genus Pusillimonas.
ARCHIVES OF MICROBIOLOGY
(2022)
Article
Microbiology
Shih-Yao Lin, Asif Hameed, Chia-Fang Tsai, Mei-Hua Hung, Chiu-Chung Young
Summary: A polyphasic taxonomic approach was used to characterize a novel species of the genus Agrilactobacillus, designated Agrilactobacillus fermenti sp. nov. Strain CC-MHH1034(T) was isolated from a fermented vegetable residue and exhibited distinctive phenotypic and chemotaxonomic traits. The results of comparative 16S rRNA gene sequence, OrthoANI, dDDH, and phylogenomic placement supported the establishment of this novel species within the family Lactobacillaceae.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
(2022)
Article
Microbiology
Shih-Yao Lin, Chia -Fang Tsai, Asif Hameed, Tzung-Han Lee, Chiu- Chung Young
Summary: A polyphasic taxonomic approach was used to characterize a strain CC-SYL272(T) isolated from paddy soil, which was identified as a new species of the genus Niabella and named Niabella agricola sp. nov. This study provides important insights into the classification of the genus Niabella.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
(2022)
Article
Soil Science
Asif Hameed, Yu -Pei Chen, Fo-Ting Shen, Shih-Yao Lin, Hsin- Huang, Yu -Wen Lin, Chiu-Chung Young
Summary: This study assessed the impacts of long-term fertilizer inputs on grain yield and edaphic factors of upland maize and wetland rice rotation system. The results showed that maize yield significantly increased under chemical fertilizer (CF), green manure (GMN1), and swine manure compost (CP)-based inputs. However, rice yield displayed marginal improvement or negative results. Principal component analysis revealed distinct clustering of soil factors during maize-rice rotation. CP-based inputs improved organic matter, electrical conductivity, microbial metabolism, and nutrient availability. Soil microbial activity and bacterial abundances were higher during maize cultivation compared to rice cultivation. In conclusion, long-term CP-based inputs significantly increased maize yield, but also acidified the soil.
APPLIED SOIL ECOLOGY
(2023)
Article
Microbiology
Shih-Yao Lin, Asif Hameed, Chia-Fang Tsai, Yu-Shan Tang, Chiu-Chung Young
Summary: A novel bacterium, designated strain CC-YST710(T), was characterized from poultry manure sampled in Taiwan using a polyphasic taxonomic approach, revealing it to represent a new Pseudogemmobacter species.
FEMS MICROBIOLOGY LETTERS
(2022)