Comparative transcriptome resources of twoDysosmaspecies (Berberidaceae) and molecular evolution of theCYP719Agene in Podophylloideae

De Novo Assembly and Discovery of Genes That Are Involved in Drought Tolerance in Tibetan Sophora moorcroftiana

(2015) Huie Li et al.   PLoS One

Transcriptomic analyses reveal the adaptive features and biological differences of guts from two invasive whitefly species

(2014) Xiao-Dong Ye et al.   BMC GENOMICS

Characterization and cross-species transferability of EST–SSR markers developed from the transcriptome of Dysosma versipellis (Berberidaceae) and their application to population genetic studies

(2014) Rui Guo et al.   MOLECULAR BREEDING

Conserved genetic regions across angiosperms as tools to develop single-copy nuclear markers in gymnosperms: an example using cycads

(2014) Dayana E. Salas-Leiva et al.   Molecular Ecology Resources

Comparative transcriptome resources of elevenPrimulinaspecies, a group of ‘stone plants’ from a biodiversity hot spot

(2014) Bin Ai et al.   Molecular Ecology Resources

Transcriptome comparison reveals the patterns of selection in domesticated and wild ramie (Boehmeria nivea L. Gaud)

(2014) Touming Liu et al.   PLANT MOLECULAR BIOLOGY

SNP Discovery in the Transcriptome of White Pacific Shrimp Litopenaeus vannamei by Next Generation Sequencing

(2014) Yang Yu et al.   PLoS One

Developing DNA barcodes for species identification in Podophylloideae (Berberidaceae)

(2014) Yun-Rui MAO et al.   Journal of Systematics and Evolution

De novo assembly and characterization of transcriptome using Illumina paired-end sequencing and identification of CesA gene in ramie (Boehmeria nivea L. Gaud)

(2013) Touming Liu et al.   BMC GENOMICS

Development of microsatellite markers by transcriptome sequencing in two species of Amorphophallus (Araceae)

(2013) Xingfei Zheng et al.   BMC GENOMICS

Comparative Genomic and Transcriptomic Analysis of Tandemly and Segmentally Duplicated Genes in Rice

(2013) Shu-Ye Jiang et al.   PLoS One

Next-Generation Sequencing of the Chrysanthemum nankingense (Asteraceae) Transcriptome Permits Large-Scale Unigene Assembly and SSR Marker Discovery

(2013) Haibin Wang et al.   PLoS One

RNA Sequencing of the Human Milk Fat Layer Transcriptome Reveals Distinct Gene Expression Profiles at Three Stages of Lactation

(2013) Danielle G. Lemay et al.   PLoS One

Single-Copy Nuclear Genes Place Haustorial Hydnoraceae within Piperales and Reveal a Cretaceous Origin of Multiple Parasitic Angiosperm Lineages

(2013) Julia Naumann et al.   PLoS One

Global Transcriptome Sequencing Using the Illumina Platform and the Development of EST-SSR Markers in Autotetraploid Alfalfa

(2013) Zhipeng Liu et al.   PLoS One

De novo Sequencing, Characterization, and Comparison of Inflorescence Transcriptomes of Cornus canadensis and C. florida (Cornaceae)

(2013) Jian Zhang et al.   PLoS One

Escaping the lianoid habit: Evolution of shrub-like growth forms in Aristolochia subgenus Isotrema (Aristolochiaceae)

(2012) Sarah T. Wagner et al.   AMERICAN JOURNAL OF BOTANY

Next Generation Sequencing in Predicting Gene Function in Podophyllotoxin Biosynthesis

(2012) Joaquim V. Marques et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

Highly conserved low-copy nuclear genes as effective markers for phylogenetic analyses in angiosperms

(2012) Ning Zhang et al.   NEW PHYTOLOGIST

Exploiting Gene Families for Phylogenomic Analysis of Myzostomid Transcriptome Data

(2012) Stefanie Hartmann et al.   PLoS One

De Novo Sequencing and Characterization of the Floral Transcriptome of Dendrocalamus latiflorus (Poaceae: Bambusoideae)

(2012) Xue-Mei Zhang et al.   PLoS One

Development and characterization of polymorphic microsatellite markers in Dysosma pleiantha (Berberidaceae)

(2011) Bi-Cai Guan et al.   AMERICAN JOURNAL OF BOTANY

Chasing the hare - Evaluating the phylogenetic utility of a nuclear single copy gene region at and below species level within the species rich group Peperomia (Piperaceae)

(2011) Julia Naumann et al.   BMC EVOLUTIONARY BIOLOGY

Sequencing and characterization of the guppy (Poecilia reticulata) transcriptome

(2011) Bonnie A Fraser et al.   BMC GENOMICS

De novo sequencing and characterization of floral transcriptome in two species of buckwheat (Fagopyrum)

(2011) Maria D Logacheva et al.   BMC GENOMICS

Isolation, phylogeny and evolution of the SymRK gene in the legume genus Lupinus L.

(2011) Frédéric Mahé et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

The telomeric transcriptome of Schizosaccharomyces pombe

(2011) Amadou Bah et al.   NUCLEIC ACIDS RESEARCH

A P450-centric view of plant evolution

(2011) David Nelson et al.   PLANT JOURNAL

Differential Gene Expression in the Siphonophore Nanomia bijuga (Cnidaria) Assessed with Multiple Next-Generation Sequencing Workflows

(2011) Stefan Siebert et al.   PLoS One

Draft genome of the globally widespread and invasive Argentine ant (Linepithema humile)

(2011) C. D. Smith et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

High-throughput DNA sequencing - concepts and limitations

(2010) Martin Kircher et al.   BIOESSAYS

Identification of shared single copy nuclear genes in Arabidopsis, Populus, Vitis and Oryza and their phylogenetic utility across various taxonomic levels

(2010) Jill M Duarte et al.   BMC EVOLUTIONARY BIOLOGY

Insights into shell deposition in the Antarctic bivalve Laternula elliptica: gene discovery in the mantle transcriptome using 454 pyrosequencing

(2010) Melody S Clark et al.   BMC GENOMICS

Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery

(2010) Thomas L Parchman et al.   BMC GENOMICS

Rapid evolution and selection inferred from the transcriptomes of sympatric crater lake cichlid fishes

(2010) K. R. ELMER et al.   MOLECULAR ECOLOGY

Genetic structure and breeding system of a rare understory herb, Dysosma versipellis (Berberidaceae), from temperate deciduous forests in China

(2009) Bi-Cai Guan et al.   AMERICAN JOURNAL OF BOTANY

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Did glacials and/or interglacials promote allopatric incipient speciation in East Asian temperate plants? Phylogeographic and coalescent analyses on refugial isolation and divergence in Dysosma versipellis

(2009) Ying-Xiong Qiu et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

InParanoid 7: new algorithms and tools for eukaryotic orthology analysis

(2009) G. Ostlund et al.   NUCLEIC ACIDS RESEARCH

Phylogeny and classification of Ranunculales: Evidence from four molecular loci and morphological data

(2009) Wei Wang et al.   PERSPECTIVES IN PLANT ECOLOGY EVOLUTION AND SYSTEMATICS

jModelTest: Phylogenetic Model Averaging

(2008) D. Posada   MOLECULAR BIOLOGY AND EVOLUTION

Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing

(2008) J. CRISTOBAL VERA et al.   MOLECULAR ECOLOGY

A Rapid Bootstrap Algorithm for the RAxML Web Servers

(2008) Alexandros Stamatakis et al.   SYSTEMATIC BIOLOGY