PFR2: a curated database of planktonic foraminifera 18S ribosomal DNA as a resource for studies of plankton ecology, biogeography and evolution

Next-Generation Environmental Diversity Surveys of Foraminifera: Preparing the Future

(2016) J. Pawlowski et al.   BIOLOGICAL BULLETIN

Genetic and morphometric evidence for parallel evolution of the Globigerinella calida morphotype

(2015) Agnes K.M. Weiner et al.   MARINE MICROPALEONTOLOGY

Patterns of Rare and Abundant Marine Microbial Eukaryotes

(2014) Ramiro Logares et al.   CURRENT BIOLOGY

A PLEA FOR DNA BARCODING OF FORAMINIFERA

(2014) J. Pawlowski et al.   JOURNAL OF FORAMINIFERAL RESEARCH

Phylogeography of the Tropical Planktonic Foraminifera Lineage Globigerinella Reveals Isolation Inconsistent with Passive Dispersal by Ocean Currents

(2014) Agnes K. M. Weiner et al.   PLoS One

SSU rDNA Divergence in Planktonic Foraminifera: Molecular Taxonomy and Biogeographic Implications

(2014) Aurore André et al.   PLoS One

Taxonomic Reference Libraries for Environmental Barcoding: A Best Practice Example from Diatom Research

(2014) Jonas Zimmermann et al.   PLoS One

Wide Occurrence of SSU rDNA Intragenomic Polymorphism in Foraminifera and its Implications for Molecular Species Identification

(2014) Alexandra Anh-Thu Weber et al.   PROTIST

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

The SILVA and “All-species Living Tree Project (LTP)” taxonomic frameworks

(2013) Pelin Yilmaz et al.   NUCLEIC ACIDS RESEARCH

Ecological modeling of the temperature dependence of cryptic species of planktonic Foraminifera in the Southern Hemisphere

(2013) Raphaël Morard et al.   PALAEOGEOGRAPHY PALAEOCLIMATOLOGY PALAEOECOLOGY

The cryptic and the apparent reversed: lack of genetic differentiation within the morphologically diverse plexus of the planktonic foraminifer Globigerinoides sacculifer

(2013) Aurore André et al.   PALEOBIOLOGY

Ecological partitioning and diversity in tropical planktonic foraminifera

(2012) Heidi A Seears et al.   BMC EVOLUTIONARY BIOLOGY

Vertical niche partitioning between cryptic sibling species of a cosmopolitan marine planktonic protist

(2012) AGNES WEINER et al.   MOLECULAR ECOLOGY

The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy

(2012) Laure Guillou et al.   NUCLEIC ACIDS RESEARCH

Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi

(2012) C. L. Schoch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Longitudinal differentiation among pelagic populations in a planktic foraminifer

(2012) Yurika Ujiié et al.   Ecology and Evolution

CBOL Protist Working Group: Barcoding Eukaryotic Richness beyond the Animal, Plant, and Fungal Kingdoms

(2012) Jan Pawlowski et al.   PLOS BIOLOGY

A phylogeny of Cenozoic macroperforate planktonic foraminifera from fossil data

(2011) Tracy Aze et al.   BIOLOGICAL REVIEWS

Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation

(2011) Torbjørn Rognes   BMC BIOINFORMATICS

A revised taxonomic and phylogenetic concept for the planktonic foraminifer species Globigerinoides ruber based on molecular and morphometric evidence

(2011) Ralf Aurahs et al.   MARINE MICROPALEONTOLOGY

Global scale same-specimen morpho-genetic analysis of Truncorotalia truncatulinoides: A perspective on the morphological species concept in planktonic foraminifera

(2011) Frédéric Quillévéré et al.   PALAEOGEOGRAPHY PALAEOCLIMATOLOGY PALAEOECOLOGY

Worldwide Genotyping in the Planktonic Foraminifer Globoconella inflata: Implications for Life History and Paleoceanography

(2011) Raphaël Morard et al.   PLoS One

Barcoding Diatoms: Exploring Alternatives to COI-5P

(2011) Sarah E. Hamsher et al.   PROTIST

How Many Species Are There on Earth and in the Ocean?

(2011) Camilo Mora et al.   PLOS BIOLOGY

Short rDNA Barcodes for Species Identification in Foraminifera

(2010) JAN PAWLOWSKI et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Environmental Barcoding Reveals Massive Dinoflagellate Diversity in Marine Environments

(2010) Rowena F. Stern et al.   PLoS One

CRYPTIC DIVERSITY IN PLANKTIC FORAMINIFERA IN THE NORTHWEST PACIFIC OCEAN

(2009) Y. Ujiie et al.   JOURNAL OF FORAMINIFERAL RESEARCH

Morphological recognition of cryptic species in the planktonic foraminifer Orbulina universa

(2009) Raphaël Morard et al.   MARINE MICROPALEONTOLOGY

SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building

(2009) M. Gouy et al.   MOLECULAR BIOLOGY AND EVOLUTION

Geographical distribution of cryptic genetic types in the planktonic foraminiferGlobigerinoides ruber

(2009) RALF AURAHS et al.   MOLECULAR ECOLOGY

Surviving mass extinction by bridging the benthic/planktic divide

(2009) K. F. Darling et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A DNA barcode for land plants

(2009) et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Barcoding Amoebae: Comparison of SSU, ITS and COI Genes as Tools for Molecular Identification of Naked Lobose Amoebae

(2009) Elena Nassonova et al.   PROTIST

Molecular evidence for an independent origin of modern triserial planktonic foraminifera from benthic ancestors

(2008) Yurika Ujiié et al.   MARINE MICROPALEONTOLOGY

The genetic diversity of planktic foraminifera and the global distribution of ribosomal RNA genotypes

(2008) Kate F. Darling et al.   MARINE MICROPALEONTOLOGY