Probing the effect of minor groove interactions on the catalytic efficiency of DNAzymes 8–17 and 10–23

Generation and selection of ribozyme variants with potential application in protein engineering and synthetic biology

(2014) Darko Balke et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Versatile synthesis of amino acid functionalized nucleosides via a domino carboxamidation reaction

(2014) Vicky Gheerardijn et al.   Beilstein Journal of Organic Chemistry

Position-specific modification with imidazolyl group on10–23 DNAzyme realized catalytic activity enhancement

(2014) Zhiwen Li et al.   BIOORGANIC & MEDICINAL CHEMISTRY

The group trend of lanthanides binding to DNA and DNAzymes with a complex but symmetric pattern

(2014) Wei Ting David Lin et al.   CHEMICAL COMMUNICATIONS

Nucleic Acid Catalysis: Metals, Nucleobases, and Other Cofactors

(2014) W. Luke Ward et al.   CHEMICAL REVIEWS

Activity of Core-Modified 10-23 DNAzymes against HCV

(2014) Laura Robaldo et al.   ChemMedChem

Site-Specific Labeling of RNA at Internal Ribose Hydroxyl Groups: Terbium-Assisted Deoxyribozymes at Work

(2014) Lea Büttner et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Catalysts from synthetic genetic polymers

(2014) Alexander I. Taylor et al.   NATURE

Towards XNA nanotechnology: new materials from synthetic genetic polymers

(2014) Vitor B. Pinheiro et al.   TRENDS IN BIOTECHNOLOGY

Ab Initio Molecular Dynamics of Na+ and Mg2+ Countercations at the Backbone of RNA in Water Solution

(2013) Stefan Kolev et al.   ACS Chemical Biology

Breaking the conservation of guanine residues in the catalytic loop of 10–23 DNAzyme by position-specific nucleobase modifications for rate enhancement

(2013) Yang Liu et al.   CHEMICAL COMMUNICATIONS

DNA-Catalyzed Hydrolysis of Esters and Aromatic Amides

(2013) Benjamin M. Brandsen et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Small, Highly Active DNAs That Hydrolyze DNA

(2013) Hongzhou Gu et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Metal ion as both a cofactor and a probe of metal-binding sites in a uranyl-specific DNAzyme: a uranyl photocleavage study

(2013) Marjorie Cepeda-Plaza et al.   NUCLEIC ACIDS RESEARCH

Catalytic DNA with phosphatase activity

(2013) J. Chandrasekar et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

You get what you select for: better swarming through more flagella

(2013) Daniel B. Kearns   TRENDS IN MICROBIOLOGY

Toward the Combinatorial Selection of Chemically Modified DNAzyme RNase A Mimics Active Against all-RNA Substrates

(2013) Marcel Hollenstein et al.   ACS Combinatorial Science

Influence of conformationally restricted pyrimidines on the activity of 10–23 DNAzymes

(2012) Laura Robaldo et al.   BIOORGANIC & MEDICINAL CHEMISTRY

The XNA world: progress towards replication and evolution of synthetic genetic polymers

(2012) Vitor B Pinheiro et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Nucleoside Triphosphates — Building Blocks for the Modification of Nucleic Acids

(2012) Marcel Hollenstein   MOLECULES

The Molecular Interactions That Stabilize RNA Tertiary Structure: RNA Motifs, Patterns, and Networks

(2011) Samuel E. Butcher et al.   ACCOUNTS OF CHEMICAL RESEARCH

Metal Ion Sensors Based on DNAzymes and Related DNA Molecules

(2011) Xiao-Bing Zhang et al.   Annual Review of Analytical Chemistry

Stability of DNA Containing a Structural Water Mimic in an A-T Rich Sequence

(2011) Kerry J. Salandria et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Characterization of non-8–17 sequences uncovers structurally diverse RNA-cleaving deoxyribozymes

(2011) Jeffrey C. F. Lam et al.   Molecular BioSystems

A novel strategy of chemical modification for rate enhancement of 10–23 DNAzyme: a combination of A9 position and 8-aza-7-deaza-2′-deoxyadenosine analogs

(2011) Junlin He et al.   ORGANIC & BIOMOLECULAR CHEMISTRY

A divalent metal-dependent self-cleaving DNAzyme with a tyrosine side chain

(2011) Curtis H. Lam et al.   ORGANIC & BIOMOLECULAR CHEMISTRY

Protein-inspired modified DNAzymes: dramatic effects of shortening side-chain length of 8-imidazolyl modified deoxyadenosines in selecting RNaseA mimicking DNAzymes

(2011) Christopher J. Hipolito et al.   ORGANIC & BIOMOLECULAR CHEMISTRY

DNA as a Versatile Chemical Component for Catalysis, Encoding, and Stereocontrol

(2010) Scott K. Silverman   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Probing the Function of Nucleotides in the Catalytic Cores of the 8−17 and 10−23 DNAzymes by Abasic Nucleotide and C3 Spacer Substitutions

(2010) Bin Wang et al.   BIOCHEMISTRY

Introduction of guanidinium-modified deoxyuridine into the substrate binding regions of DNAzyme 10–23 to enhance target affinity: Implications for DNAzyme design

(2010) Curtis H. Lam et al.   BIOORGANIC & MEDICINAL CHEMISTRY LETTERS

A Versatile Endoribonuclease Mimic Made of DNA: Characteristics and Applications of the 8-17 RNA-Cleaving DNAzyme

(2010) Kenny Schlosser  et al.   CHEMBIOCHEM

Influence of Cleavage Site on Global Folding of an RNA-Cleaving DNAzyme

(2010) Jeffrey C. F. Lam et al.   CHEMBIOCHEM

RNA-cleaving 10–23 deoxyribozyme with a single amino acid-like functionality operates without metal ion cofactors

(2010) Damian Smuga et al.   NEW JOURNAL OF CHEMISTRY

A DNAzyme with Three Protein-Like Functional Groups: Enhancing Catalytic Efficiency of M2+-Independent RNA Cleavage

(2009) Marcel Hollenstein et al.   CHEMBIOCHEM

Biologically Inspired Synthetic Enzymes Made from DNA

(2009) Kenny Schlosser et al.   CHEMISTRY & BIOLOGY

Probing Metal-Ion Purine Interactions at DNA Minor-Groove Sites

(2009) Miguel A. Galindo et al.   INORGANIC CHEMISTRY

Activity, Folding and Z-DNA Formation of the 8-17 DNAzyme in the Presence of Monovalent Ions

(2009) Debapriya Mazumdar et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

DNA-catalyzed sequence-specific hydrolysis of DNA

(2009) Madhavaiah Chandra et al.   Nature Chemical Biology

A self-cleaving DNA enzyme modified with amines, guanidines and imidazoles operates independently of divalent metal cations (M 2+ )

(2009) Marcel Hollenstein et al.   NUCLEIC ACIDS RESEARCH

DNA-Catalyzed Formation of Nucleopeptide Linkages

(2008) P. I. Pradeepkumar et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

A Highly Selective DNAzyme Sensor for Mercuric Ions

(2008) Marcel Hollenstein et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

A Contact Photo-Cross-linking Investigation of the Active Site of the 8-17 Deoxyribozyme

(2008) Yong Liu et al.   JOURNAL OF MOLECULAR BIOLOGY

DNA and RNA Can Be Equally Efficient Catalysts for Carbon−Carbon Bond Formation

(2008) Madhavaiah Chandra et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

DNAzyme-mediated catalysis with only guanosine and cytidine nucleotides

(2008) Kenny Schlosser et al.   NUCLEIC ACIDS RESEARCH

Sequence-function relationships provide new insight into the cleavage site selectivity of the 8-17 RNA-cleaving deoxyribozyme

(2008) K. Schlosser et al.   NUCLEIC ACIDS RESEARCH