Reconstructing (Super)Trees from Data Sets with Missing Distances: Not All Is Lost

Flexible methods for estimating genetic distances from single nucleotide polymorphisms

(2015) Simon Joly et al.   Methods in Ecology and Evolution

Ribosomal DNA Sequence Heterogeneity Reflects Intraspecies Phylogenies and Predicts Genome Structure in Two Contrasting Yeast Species

(2014) Claire West et al.   SYSTEMATIC BIOLOGY

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

(2014) Remco Bouckaert et al.   PLoS Computational Biology

Selecting informative subsets of sparse supermatrices increases the chance to find correct trees

(2013) Bernhard Misof et al.   BMC BIOINFORMATICS

Lassoing and Corralling Rooted Phylogenetic Trees

(2013) Katharina T. Huber et al.   BULLETIN OF MATHEMATICAL BIOLOGY

FlipCut Supertrees: Towards Matrix Representation Accuracy in Polynomial Time

(2012) Malte Brinkmeyer et al.   ALGORITHMICA

Orthology relations, symbolic ultrametrics, and cographs

(2012) Marc Hellmuth et al.   JOURNAL OF MATHEMATICAL BIOLOGY

Impact of Missing Data on Phylogenies Inferred from Empirical Phylogenomic Data Sets

(2012) Béatrice Roure et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genetic variation within and between winter wheat genotypes from Turkey, Kazakhstan, and Europe as determined by nucleotide-binding-site profiling

(2011) Muge Sayar-Turet et al.   GENOME

Consequences of Different Null Models on the Tree Shape Bias of Supertree Methods

(2011) Anne Kupczok   SYSTEMATIC BIOLOGY

Phylogenomics with incomplete taxon coverage: the limits to inference

(2010) Michael J Sanderson et al.   BMC EVOLUTIONARY BIOLOGY

Characterizing phylogenetically decisive taxon coverage

(2009) Mike Steel et al.   APPLIED MATHEMATICS LETTERS

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

Population genomics of domestic and wild yeasts

(2009) Gianni Liti et al.   NATURE

Using SSR markers to evaluate the genetic diversity of Lentinula edodes’ natural germplasm in China

(2009) Yang Xiao et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

EPoS: a modular software framework for phylogenetic analysis

(2008) T. Griebel et al.   BIOINFORMATICS

PhySIC_IST: cleaning source trees to infer more informative supertrees

(2008) Celine Scornavacca et al.   BMC BIOINFORMATICS

Fast NJ-like algorithms to deal with incomplete distance matrices

(2008) Alexis Criscuolo et al.   BMC BIOINFORMATICS

Calibrating the avian molecular clock

(2008) J. T. WEIR et al.   MOLECULAR ECOLOGY