Divergent Mitochondrial Respiratory Chains in Phototrophic Relatives of Apicomplexan Parasites

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Chromera velia, Endosymbioses and the Rhodoplex Hypothesis—Plastid Evolution in Cryptophytes, Alveolates, Stramenopiles, and Haptophytes (CASH Lineages)

(2014) Jörn Petersen et al.   Genome Biology and Evolution

Description of Colponema vietnamica sp.n. and Acavomonas peruviana n. gen. n. sp., Two New Alveolate Phyla (Colponemidia nom. nov. and Acavomonidia nom. nov.) and Their Contributions to Reconstructing the Ancestral State of Alveolates and Eukaryotes

(2014) Denis V. Tikhonenkov et al.   PLoS One

The Streamlined Genome of Phytomonas spp. Relative to Human Pathogenic Kinetoplastids Reveals a Parasite Tailored for Plants

(2014) Betina M. Porcel et al.   PLoS Genetics

Colponemids Represent Multiple Ancient Alveolate Lineages

(2013) Jan Janouškovec et al.   CURRENT BIOLOGY

Phylogenomics of the Intracellular Parasite Mikrocytos mackini Reveals Evidence for a Mitosome in Rhizaria

(2013) Fabien Burki et al.   CURRENT BIOLOGY

The metabolic roles of the endosymbiotic organelles of Toxoplasma and Plasmodium spp.

(2013) Lilach Sheiner et al.   CURRENT OPINION IN MICROBIOLOGY

Strikingly Bacteria-Like and Gene-Rich Mitochondrial Genomes throughout Jakobid Protists

(2013) Gertraud Burger et al.   Genome Biology and Evolution

Split Photosystem Protein, Linear-Mapping Topology, and Growth of Structural Complexity in the Plastid Genome of Chromera velia

(2013) Jan Janouškovec et al.   MOLECULAR BIOLOGY AND EVOLUTION

Single point mutations in ATP synthase compensate for mitochondrial genome loss in trypanosomes

(2013) Samuel Dean et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Re-evaluating the Green versus Red Signal in Eukaryotes with Secondary Plastid of Red Algal Origin

(2012) Fabien Burki et al.   Genome Biology and Evolution

Biochemistry and Evolution of Anaerobic Energy Metabolism in Eukaryotes

(2012) M. Muller et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Alveolate Mitochondrial Metabolic Evolution: Dinoflagellates Force Reassessment of the Role of Parasitism as a Driver of Change in Apicomplexans

(2012) Jillian C. Danne et al.   MOLECULAR BIOLOGY AND EVOLUTION

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

ProtTest 3: fast selection of best-fit models of protein evolution

(2011) Diego Darriba et al.   BIOINFORMATICS

Red and Problematic Green Phylogenetic Signals among Thousands of Nuclear Genes from the Photosynthetic and Apicomplexa-Related Chromera velia

(2011) Christian Woehle et al.   Genome Biology and Evolution

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

Spliced Leader RNAs, Mitochondrial Gene Frameshifts and Multi-Protein Phylogeny Expand Support for the Genus Perkinsus as a Unique Group of Alveolates

(2011) Huan Zhang et al.   PLoS One

Morphology, Ultrastructure and Life Cycle of Vitrella brassicaformis n. sp., n. gen., a Novel Chromerid from the Great Barrier Reef

(2011) Miroslav Oborník et al.   PROTIST

Extensive frameshift at all AGG and CCC codons in the mitochondrial cytochrome c oxidase subunit 1 gene of Perkinsus marinus (Alveolata; Dinoflagellata)

(2010) Isao Masuda et al.   NUCLEIC ACIDS RESEARCH

A common red algal origin of the apicomplexan, dinoflagellate, and heterokont plastids

(2010) J. Janouskovec et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Intermediary Metabolism in Protists: a Sequence-based View of Facultative Anaerobic Metabolism in Evolutionarily Diverse Eukaryotes

(2010) Michael L. Ginger et al.   PROTIST

Irremediable Complexity?

(2010) M. W. Gray et al.   SCIENCE

Mitochondrial Evolution and Functions in Malaria Parasites

(2009) Akhil B. Vaidya et al.   Annual Review of Microbiology

Dinoflagellate mitochondrial genomes: stretching the rules of molecular biology

(2009) Ross F. Waller et al.   BIOESSAYS

Phylogenomics of the oxidative phosphorylation in fungi reveals extensive gene duplication followed by functional divergence

(2009) Marina Marcet-Houben et al.   BMC EVOLUTIONARY BIOLOGY

Surprising variety in energy metabolism within Trypanosomatidae

(2009) Aloysius G.M. Tielens et al.   TRENDS IN PARASITOLOGY

Evolution of the apicoplast and its hosts: From heterotrophy to autotrophy and back again

(2008) Miroslav Oborník et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

A photosynthetic alveolate closely related to apicomplexan parasites

(2008) Robert B. Moore et al.   NATURE

Dinoflagellates: a mitochondrial genome all at sea

(2008) Edmund A. Nash et al.   TRENDS IN GENETICS