Bayesian Inference Reveals Host-Specific Contributions to the Epidemic Expansion of Influenza A H5N1

Risks of Avian Influenza Transmission in Areas of Intensive Free-Ranging Duck Production with Wild Waterfowl

(2014) Julien Cappelle et al.   EcoHealth

A synchronized global sweep of the internal genes of modern avian influenza virus

(2014) Michael Worobey et al.   NATURE

Avian influenza H5N1 viral and bird migration networks in Asia

(2014) Huaiyu Tian et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Predicting the risk of avian influenza A H7N9 infection in live-poultry markets across Asia

(2014) Marius Gilbert et al.   Nature Communications

The Genealogical Population Dynamics of HIV-1 in a Large Transmission Chain: Bridging within and among Host Evolutionary Rates

(2014) Bram Vrancken et al.   PLoS Computational Biology

Unifying Viral Genetics and Human Transportation Data to Predict the Global Transmission Dynamics of Human Influenza H3N2

(2014) Philippe Lemey et al.   PLoS Pathogens

Integrating influenza antigenic dynamics with molecular evolution

(2014) Trevor Bedford et al.   eLife

Bayesian evolutionary model testing in the phylogenomics era: matching model complexity with computational efficiency

(2013) G. Baele et al.   BIOINFORMATICS

Make the most of your samples: Bayes factor estimators for high-dimensional models of sequence evolution

(2013) Guy Baele et al.   BMC BIOINFORMATICS

Novel human H7N9 influenza virus in China

(2013) Chengmin WANG et al.   Integrative Zoology

Comparative epidemiology of human infections with avian influenza A H7N9 and H5N1 viruses in China: a population-based study of laboratory-confirmed cases

(2013) Benjamin J Cowling et al.   LANCET

The emergence of influenza A H7N9 in human beings 16 years after influenza A H5N1: a tale of two cities

(2013) Kelvin KW To et al.   LANCET INFECTIOUS DISEASES

The genesis and source of the H7N9 influenza viruses causing human infections in China

(2013) Tommy Tsan-Yuk Lam et al.   NATURE

Epidemiology of Human Infections with Avian Influenza A(H7N9) Virus in China

(2013) Qun Li et al.   NEW ENGLAND JOURNAL OF MEDICINE

Simultaneously reconstructing viral cross-species transmission history and identifying the underlying constraints

(2013) N. R. Faria et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Interventions for avian influenza A (H5N1) risk management in live bird market networks

(2013) G. Fournie et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Distinguishable Epidemics of Multidrug-Resistant Salmonella Typhimurium DT104 in Different Hosts

(2013) A. E. Mather et al.   SCIENCE

On the Biogeography of Centipeda: A Species-Tree Diffusion Approach

(2013) S. Nylinder et al.   SYSTEMATIC BIOLOGY

Global alert to avian influenza virus infection: From H5N1 to H7N9

(2013) Yong Poovorawan et al.   Pathogens and Global Health

New World Bats Harbor Diverse Influenza A Viruses

(2013) Suxiang Tong et al.   PLoS Pathogens

A one health perspective on HPAI H5N1 in the Greater Mekong sub-region

(2012) Dirk U. Pfeiffer et al.   COMPARATIVE IMMUNOLOGY MICROBIOLOGY AND INFECTIOUS DISEASES

Improving the Accuracy of Demographic and Molecular Clock Model Comparison While Accommodating Phylogenetic Uncertainty

(2012) Guy Baele et al.   MOLECULAR BIOLOGY AND EVOLUTION

Migration strategy affects avian influenza dynamics in mallards (Anas platyrhynchos)

(2012) Nichola J. Hill et al.   MOLECULAR ECOLOGY

Highly Pathogenic Avian Influenza Virus among Wild Birds in Mongolia

(2012) Martin Gilbert et al.   PLoS One

A distinct lineage of influenza A virus from bats

(2012) S. Tong et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Unifying the spatial epidemiology and molecular evolution of emerging epidemics

(2012) O. G. Pybus et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mapping the Origins and Expansion of the Indo-European Language Family

(2012) R. Bouckaert et al.   SCIENCE

Airborne Transmission of Influenza A/H5N1 Virus Between Ferrets

(2012) S. Herfst et al.   SCIENCE

The Potential for Respiratory Droplet-Transmissible A/H5N1 Influenza Virus to Evolve in a Mammalian Host

(2012) C. A. Russell et al.   SCIENCE

Transmission Rate and Reproductive Number of the H5N1 Highly Pathogenic Avian Influenza Virus During the December 2005-July 2008 Epidemic in Nigeria

(2012) B. Bett et al.   Transboundary and Emerging Diseases

SPREAD: spatial phylogenetic reconstruction of evolutionary dynamics

(2011) F. Bielejec et al.   BIOINFORMATICS

Ancient Hybridization and an Irish Origin for the Modern Polar Bear Matriline

(2011) Ceiridwen J. Edwards et al.   CURRENT BIOLOGY

Flying Over an Infected Landscape: Distribution of Highly Pathogenic Avian Influenza H5N1 Risk in South Asia and Satellite Tracking of Wild Waterfowl

(2011) Marius Gilbert et al.   EcoHealth

BEAGLE: An Application Programming Interface and High-Performance Computing Library for Statistical Phylogenetics

(2011) Daniel L. Ayres et al.   SYSTEMATIC BIOLOGY

Toward a quantitative understanding of viral phylogeography

(2011) Nuno Rodrigues Faria et al.   Current Opinion in Virology

Phylogeography Takes a Relaxed Random Walk in Continuous Space and Time

(2010) P. Lemey et al.   MOLECULAR BIOLOGY AND EVOLUTION

Three roads diverged? Routes to phylogeographic inference

(2010) Erik W. Bloomquist et al.   TRENDS IN ECOLOGY & EVOLUTION

Many-core algorithms for statistical phylogenetics

(2009) M. A. Suchard et al.   BIOINFORMATICS

Ducks: The “Trojan Horses” of H5N1 influenza

(2009) Jeong-Ki Kim et al.   Influenza and Other Respiratory Viruses

Evolutionary analysis of the dynamics of viral infectious disease

(2009) Oliver G. Pybus et al.   NATURE REVIEWS GENETICS

Bayesian Phylogeography Finds Its Roots

(2009) Philippe Lemey et al.   PLoS Computational Biology

Evolutionary History and Phylogeography of Human Viruses

(2008) Edward C. Holmes   Annual Review of Microbiology

Recent developments in the MAFFT multiple sequence alignment program

(2008) K. Katoh et al.   BRIEFINGS IN BIOINFORMATICS

Epidemiology of H5N1 avian influenza

(2008) Karen S. Yee et al.   COMPARATIVE IMMUNOLOGY MICROBIOLOGY AND INFECTIOUS DISEASES

Finding the real case-fatality rate of H5N1 avian influenza

(2008) F C K Li et al.   JOURNAL OF EPIDEMIOLOGY AND COMMUNITY HEALTH

Influenza A H5N1 Immigration Is Filtered Out at Some International Borders

(2008) Robert G. Wallace et al.   PLoS One