Systematic Determination of Human Cyclin Dependent Kinase (CDK)-9 Interactome Identifies Novel Functions in RNA Splicing Mediated by the DEAD Box (DDX)-5/17 RNA Helicases

Inferring Genome-Wide Functional Modulatory Network: A Case Study on NF-κB/RelA Transcription Factor

(2015) Xueling Li et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Actin-binding protein alpha-actinin 4 (ACTN4) is a transcriptional co-activator of RelA/p65 sub-unit of NF-kB.

(2015) Vasilisa Aksenova et al.   Oncotarget

Modulation of Gene Expression Regulated by the Transcription Factor NF-κB/RelA

(2014) Xueling Li et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

RNA Helicases DDX5 and DDX17 Dynamically Orchestrate Transcription, miRNA, and Splicing Programs in Cell Differentiation

(2014) Etienne Dardenne et al.   Cell Reports

The DEAD box proteins DDX5 (p68) and DDX17 (p72): Multi-tasking transcriptional regulators

(2013) Frances V. Fuller-Pace   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

DEAD-box helicases as integrators of RNA, nucleotide and protein binding

(2013) Andrea A. Putnam et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

CDK9-Dependent Transcriptional Elongation in the Innate Interferon-Stimulated Gene Response to Respiratory Syncytial Virus Infection in Airway Epithelial Cells

(2013) B. Tian et al.   JOURNAL OF VIROLOGY

Applications of selected reaction monitoring (SRM)-mass spectrometry (MS) for quantitative measurement of signaling pathways

(2013) Yingxin Zhao et al.   METHODS

A probabilistic approach to learn chromatin architecture and accurate inference of the NF-κB/RelA regulatory network using ChIP-Seq

(2013) Jun Yang et al.   NUCLEIC ACIDS RESEARCH

DBIRD complex integrates alternative mRNA splicing with RNA polymerase II transcript elongation

(2012) Pierre Close et al.   NATURE

The airway epithelium in asthma

(2012) Bart N Lambrecht et al.   NATURE MEDICINE

A travel guide to Cytoscape plugins

(2012) Rintaro Saito et al.   NATURE METHODS

Dual role of the ddx5/ddx17 RNA helicases in the control of the pro-migratory NFAT5 transcription factor

(2012) S Germann et al.   ONCOGENE

Co-transcriptional nuclear actin dynamics

(2012) Piergiorgio Percipalle   Nucleus

Perspective: Expanding role of cyclin dependent kinases in cytokine inducible gene expression

(2011) Allan R. Brasier   CELL CYCLE

RelA Ser276 Phosphorylation-Coupled Lys310 Acetylation Controls Transcriptional Elongation of Inflammatory Cytokines in Respiratory Syncytial Virus Infection

(2011) A. R. Brasier et al.   JOURNAL OF VIROLOGY

PINA v2.0: mining interactome modules

(2011) Mark J. Cowley et al.   NUCLEIC ACIDS RESEARCH

HSPB1, actin filament dynamics, and aging cells

(2010) Bindi M. Doshi et al.   Annals of the New York Academy of Sciences

The Actin-binding Protein, Actinin Alpha 4 (ACTN4), Is a Nuclear Receptor Coactivator that Promotes Proliferation of MCF-7 Breast Cancer Cells

(2010) Simran Khurana et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Differential Proteomics Based on18O Labeling to Determine the Cyclin Dependent Kinase 9 Interactome

(2010) Karel Bezstarosti et al.   JOURNAL OF PROTEOME RESEARCH

Role of Peroxiredoxin 1 and Peroxiredoxin 4 in Protection of Respiratory Syncytial Virus-Induced Cysteinyl Oxidation of Nuclear Cytoskeletal Proteins

(2010) M. Jamaluddin et al.   JOURNAL OF VIROLOGY

Altered Retinoic Acid Metabolism in Diabetic Mouse Kidney Identified by 18O Isotopic Labeling and 2D Mass Spectrometry

(2010) Jonathan M. Starkey et al.   PLoS One

HSPB7 is a SC35 speckle resident small heat shock protein

(2009) Michel J. Vos et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH

Control of Inducible Gene Expression by Signal-Dependent Transcriptional Elongation

(2009) Diana C. Hargreaves et al.   CELL

Nuclear actin and actin-binding proteins in the regulation of transcription and gene expression

(2009) Bin Zheng et al.   FEBS Journal

“Cotranscriptionality”: The Transcription Elongation Complex as a Nexus for Nuclear Transactions

(2009) Roberto Perales et al.   MOLECULAR CELL

RelA Ser276 Phosphorylation Is Required for Activation of a Subset of NF- B-Dependent Genes by Recruiting Cyclin-Dependent Kinase 9/Cyclin T1 Complexes

(2008) D. E. Nowak et al.   MOLECULAR AND CELLULAR BIOLOGY

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

(2008) Jürgen Cox et al.   NATURE BIOTECHNOLOGY

STRING 8--a global view on proteins and their functional interactions in 630 organisms

(2008) L. J. Jensen et al.   NUCLEIC ACIDS RESEARCH