Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways

Interactive Features of Proteins Composing Eukaryotic Circadian Clocks

(2014) Brian R. Crane et al.   Annual Review of Biochemistry

Connections between circadian clocks and carbon metabolism reveal species-specific effects on growth control

(2014) Lukas M. Müller et al.   JOURNAL OF EXPERIMENTAL BOTANY

Light and the circadian clock mediate time-specific changes in sensitivity to UV-B stress under light/dark cycles

(2014) Tomomi Takeuchi et al.   JOURNAL OF EXPERIMENTAL BOTANY

Multiple Layers of Posttranslational Regulation Refine Circadian Clock Activity in Arabidopsis

(2014) P. J. Seo et al.   PLANT CELL

Meta-Analysis of Arabidopsis thaliana Phospho-Proteomics Data Reveals Compartmentalization of Phosphorylation Motifs

(2014) K. J. van Wijk et al.   PLANT CELL

Proteomics and circadian rhythms: It's all about signaling!

(2014) Daniel Mauvoisin et al.   PROTEOMICS

In-Vivo Quantitative Proteomics Reveals a Key Contribution of Post-Transcriptional Mechanisms to the Circadian Regulation of Liver Metabolism

(2014) Maria S. Robles et al.   PLoS Genetics

Arabidopsis CURVATURE THYLAKOID1 Proteins Modify Thylakoid Architecture by Inducing Membrane Curvature

(2013) U. Armbruster et al.   PLANT CELL

Regulation of Arabidopsis Leaf Hydraulics Involves Light-Dependent Phosphorylation of Aquaporins in Veins

(2013) K. Prado et al.   PLANT CELL

Circadian clock-dependent and -independent rhythmic proteomes implement distinct diurnal functions in mouse liver

(2013) D. Mauvoisin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Wheels within wheels: the plant circadian system

(2013) Polly Yingshan Hsu et al.   TRENDS IN PLANT SCIENCE

ELF4 Regulates GIGANTEA Chromatin Access through Subnuclear Sequestration

(2013) Yumi Kim et al.   Cell Reports

The Circadian Clock Coordinates Ribosome Biogenesis

(2013) Céline Jouffe et al.   PLOS BIOLOGY

Complexity in the Wiring and Regulation of Plant Circadian Networks

(2012) Dawn H. Nagel et al.   CURRENT BIOLOGY

Deep sequencing the circadian and diurnal transcriptome of Drosophila brain

(2012) M. E. Hughes et al.   GENOME RESEARCH

STRING v9.1: protein-protein interaction networks, with increased coverage and integration

(2012) Andrea Franceschini et al.   NUCLEIC ACIDS RESEARCH

EARLY FLOWERING4 Recruitment of EARLY FLOWERING3 in the Nucleus Sustains the Arabidopsis Circadian Clock

(2012) E. Herrero et al.   PLANT CELL

Reconstitution of abscisic acid activation of SLAC1 anion channel by CPK6 and OST1 kinases and branched ABI1 PP2C phosphatase action

(2012) B. Brandt et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transcriptional Architecture and Chromatin Landscape of the Core Circadian Clock in Mammals

(2012) N. Koike et al.   SCIENCE

Phosphorylation in the plant circadian system

(2012) Jelena Kusakina et al.   TRENDS IN PLANT SCIENCE

Genome-Wide RNA Polymerase II Profiles and RNA Accumulation Reveal Kinetics of Transcription and Associated Epigenetic Changes During Diurnal Cycles

(2012) Gwendal Le Martelot et al.   PLOS BIOLOGY

Nascent-Seq reveals novel features of mouse circadian transcriptional regulation

(2012) Jerome S Menet et al.   eLife

Anion Channels/Transporters in Plants: From Molecular Bases to Regulatory Networks

(2011) Hélène Barbier-Brygoo et al.   Annual Review of Plant Biology

Temporal Repression of Core Circadian Genes Is Mediated through EARLY FLOWERING 3 in Arabidopsis

(2011) Laura E. Dixon et al.   CURRENT BIOLOGY

Kinases and phosphatases in the mammalian circadian clock

(2011) Silke Reischl et al.   FEBS LETTERS

The ELF4–ELF3–LUX complex links the circadian clock to diurnal control of hypocotyl growth

(2011) Dmitri A. Nusinow et al.   NATURE

Understanding systems-level properties: timely stories from the study of clocks

(2011) John B. Hogenesch et al.   NATURE REVIEWS GENETICS

Shotguns in the Front Line: Phosphoproteomics in Plants

(2011) H. Nakagami et al.   PLANT AND CELL PHYSIOLOGY

Differential Phosphorylation of Ribosomal Proteins in Arabidopsis thaliana Plants during Day and Night

(2011) Maria V. Turkina et al.   PLoS One

REVEILLE8 and PSEUDO-REPONSE REGULATOR5 Form a Negative Feedback Loop within the Arabidopsis Circadian Clock

(2011) Reetika Rawat et al.   PLoS Genetics

Chloroplast DnaJ-like proteins 3 and 4 (CDJ3/4) fromChlamydomonas reinhardtiicontain redox-active Fe–S clusters and interact with stromal HSP70B

(2010) Karolin V. Dorn et al.   BIOCHEMICAL JOURNAL

Dynamics of reversible protein phosphorylation in thylakoids of flowering plants: The roles of STN7, STN8 and TAP38

(2010) Paolo Pesaresi et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

PRR5 regulates phosphorylation, nuclear import and subnuclear localization of TOC1 in the Arabidopsis circadian clock

(2010) Lei Wang et al.   EMBO JOURNAL

Thioredoxin-regulated β-amylase (BAM1) triggers diurnal starch degradation in guard cells, and in mesophyll cells under osmotic stress

(2010) Concetta Valerio et al.   JOURNAL OF EXPERIMENTAL BOTANY

The mechanism of eukaryotic translation initiation and principles of its regulation

(2010) Richard J. Jackson et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

The Circadian Clock Modulates Water Dynamics and Aquaporin Expression in Arabidopsis Roots

(2010) Tomoyuki Takase et al.   PLANT AND CELL PHYSIOLOGY

CLC-b-Mediated NOFormula/H+ Exchange Across the Tonoplast of Arabidopsis Vacuoles

(2010) J. von der Fecht-Bartenbach et al.   PLANT AND CELL PHYSIOLOGY

Large-Scale Comparative Phosphoproteomics Identifies Conserved Phosphorylation Sites in Plants

(2010) H. Nakagami et al.   PLANT PHYSIOLOGY

Circadian control of carbohydrate availability for growth in Arabidopsis plants at night

(2010) A. Graf et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Singlet oxygen signaling links photosynthesis to translation and plant growth

(2010) Christiane Reinbothe et al.   TRENDS IN PLANT SCIENCE

The Functional Interplay between Protein Kinase CK2 and CCA1 Transcriptional Activity Is Essential for Clock Temperature Compensation in Arabidopsis

(2010) Sergi Portolés et al.   PLoS Genetics

Proteomic Analysis Reveals the Role of Synaptic Vesicle Cycling in Sustaining the Suprachiasmatic Circadian Clock

(2009) Michael J. Deery et al.   CURRENT BIOLOGY

TOC1 functions as a molecular switch connecting the circadian clock with plant responses to drought

(2009) Tommaso Legnaioli et al.   EMBO JOURNAL

Integrating ELF4 into the circadian system through combined structural and functional studies

(2009) Elsebeth Kolmos et al.   HFSP Journal

Quantitative Proteomics Reveals a Dynamic Interactome and Phase-Specific Phosphorylation in the Neurospora Circadian Clock

(2009) Christopher L. Baker et al.   MOLECULAR CELL

Ribosome and transcript copy numbers, polysome occupancy and enzyme dynamics in Arabidopsis

(2009) Maria Piques et al.   Molecular Systems Biology

In vitro reconstitution of an abscisic acid signalling pathway

(2009) Hiroaki Fujii et al.   NATURE

The Arabidopsis Nitrate Transporter NRT1.7, Expressed in Phloem, Is Responsible for Source-to-Sink Remobilization of Nitrate

(2009) S.-C. Fan et al.   PLANT CELL

PYR/PYL/RCAR family members are major in-vivo ABI1 protein phosphatase 2C-interacting proteins in Arabidopsis

(2009) Noriyuki Nishimura et al.   PLANT JOURNAL

Large-Scale Arabidopsis Phosphoproteome Profiling Reveals Novel Chloroplast Kinase Substrates and Phosphorylation Networks

(2009) S. Reiland et al.   PLANT PHYSIOLOGY

Singlet oxygen-dependent translational control in the tigrina-d.12 mutant of barley

(2009) D. Khandal et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ser/Thr/Tyr phosphoproteome analysis of pathogenic and non-pathogenicPseudomonasspecies

(2009) Ayshwarya Ravichandran et al.   PROTEOMICS

Abscisic Acid Inhibits Type 2C Protein Phosphatases via the PYR/PYL Family of START Proteins

(2009) S.-Y. Park et al.   SCIENCE

Exploring the transcriptional landscape of plant circadian rhythms using genome tiling arrays

(2009) Samuel P Hazen et al.   GENOME BIOLOGY

Post-translational Regulation of theArabidopsisCircadian Clock through Selective Proteolysis and Phosphorylation of Pseudo-response Regulator Proteins

(2008) Sumire Fujiwara et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis

(2008) Naoyuki Sugiyama et al.   Molecular Systems Biology

Comparative Transcriptome of Diurnally Oscillating Genes and Hormone-Responsive Genes in Arabidopsis thaliana: Insight into Circadian Clock-Controlled Daily Responses to Common Ambient Stresses in Plants

(2008) Takeshi Mizuno et al.   PLANT AND CELL PHYSIOLOGY

Systems Biology of the Clock in Neurospora crassa

(2008) Wubei Dong et al.   PLoS One

Precision proteomics: The case for high resolution and high mass accuracy

(2008) M. Mann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Global transcriptome analysis reveals circadian regulation of key pathways in plant growth and development

(2008) Michael F Covington et al.   GENOME BIOLOGY