Applications and Implications of Neutral versus Non-neutral Markers in Molecular Ecology

Single nucleotide polymorphisms unravel hierarchical divergence and signatures of selection among Alaskan sockeye salmon (Oncorhynchus nerka) populations

(2011) Daniel Gomez-Uchida et al.   BMC EVOLUTIONARY BIOLOGY

Natural selection drives clinal life history patterns in the perennial sunflower species, Helianthus maximiliani

(2011) TAKESHI KAWAKAMI et al.   MOLECULAR ECOLOGY

Scanning the genome for gene SNPs related to climate adaptation and estimating selection at the molecular level in boreal black spruce

(2011) JULIEN PRUNIER et al.   MOLECULAR ECOLOGY

Major histocompatibility complex heterozygosity enhances reproductive success

(2011) M. THOß et al.   MOLECULAR ECOLOGY

Genetic analysis of differentiation among breeding ponds reveals a candidate gene for local adaptation in Rana arvalis

(2011) ALEX RICHTER-BOIX et al.   MOLECULAR ECOLOGY

How much can parentage analyses tell us about precapture dispersal?

(2011) P. M. WASER et al.   MOLECULAR ECOLOGY

Palaeoclimate change drove diversification among isolated mountain refugia in the Australian arid zone

(2011) MITZY PEPPER et al.   MOLECULAR ECOLOGY

Application of SNPs for population genetics of nonmodel organisms: new opportunities and challenges

(2011) S. J. HELYAR et al.   Molecular Ecology Resources

Comparison ofFSToutlier tests for SNP loci under selection

(2011) SHAWN R. NARUM et al.   Molecular Ecology Resources

Neutral and Nonneutral Genetic Markers Revealed the Presence of Inshore and Offshore Stock Components of Atlantic Cod in Greenland Waters

(2011) Christophe Pampoulie et al.   TRANSACTIONS OF THE AMERICAN FISHERIES SOCIETY

The Functional Genomics of Inbreeding Depression: A New Approach to an Old Problem

(2010) Ken N. Paige   BIOSCIENCE

Insights into the role of differential gene expression on the ecological adaptation of the snail Littorina saxatilis

(2010) Mónica Martínez-Fernández et al.   BMC EVOLUTIONARY BIOLOGY

Conservation genetics of Hill’s thistle (Cirsium hillii)

(2010) Joanna R. Freeland et al.   Botany

Third Generation DNA Sequencing: Pacific Biosciences' Single Molecule Real Time Technology

(2010) Alice McCarthy   CHEMISTRY & BIOLOGY

New insights on diet variability revealed by DNA barcoding and high-throughput pyrosequencing: chamois diet in autumn as a case study

(2010) Gilles Rayé et al.   ECOLOGICAL RESEARCH

Microsatellite markers: an overview of the recent progress in plants

(2010) Rajwant K. Kalia et al.   EUPHYTICA

LOCAL ADAPTATION IN A CHANGING WORLD: THE ROLES OF GENE-FLOW, MUTATION, AND SEXUAL REPRODUCTION

(2010) Ace North et al.   EVOLUTION

INTEGRATING EVOLUTIONARY AND FUNCTIONAL APPROACHES TO INFER ADAPTATION AT SPECIFIC LOCI

(2010) Jay F. Storz et al.   EVOLUTION

Rapid selection against inbreeding in a wild population of a rare frog

(2010) Gentile Francesco Ficetola et al.   Evolutionary Applications

Quantitative Trait Locus Mapping of Genes Under Selection Across Multiple Years and Sites in Avena barbata: Epistasis, Pleiotropy, and Genotype-by-Environment Interactions

(2010) R. G. Latta et al.   GENETICS

Progress and Promise of Genome-Wide Association Studies for Human Complex Trait Genetics

(2010) B. E. Stranger et al.   GENETICS

Variation of selfing rate and inbreeding depression among individuals and across generations within an admixed Cedrus population

(2010) M Ferriol et al.   HEREDITY

Comparison of morphological and molecular traits for species identification and taxonomic grouping of oncaeid copepods

(2010) Ruth Böttger-Schnack et al.   HYDROBIOLOGIA

Selection pressures have caused genome-wide population differentiation ofAnthoxanthum odoratumdespite the potential for high gene flow

(2010) J. R. FREELAND et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Comparing three different methods to detect selective loci using dominant markers

(2010) A. PÉREZ-FIGUEROA et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Comparative genome scan detects host-related divergent selection in the grasshopper Hesperotettix viridis

(2010) JENNIFER L. APPLE et al.   MOLECULAR ECOLOGY

Heterozygosity-fitness correlations of conserved microsatellite markers in Kentish plovers Charadrius alexandrinus

(2010) CLEMENS KÜPPER et al.   MOLECULAR ECOLOGY

The imprecision of heterozygosity-fitness correlations hinders the detection of inbreeding and inbreeding depression in a threatened species

(2010) CATHERINE E. GRUEBER et al.   MOLECULAR ECOLOGY

Identification of a candidate adaptive polymorphism forDrosophilalife history by parallel independent clines on two continents

(2010) ANNALISE B. PAABY et al.   MOLECULAR ECOLOGY

SNP signatures of selection on standing genetic variation and their association with adaptive phenotypes along gradients of ecological speciation in lake whitefish species pairs (Coregonus spp.)

(2010) SÉBASTIEN RENAUT et al.   MOLECULAR ECOLOGY

Multiple approaches to detect outliers in a genome scan for selection in ocellated lizards (Lacerta lepida) along an environmental gradient

(2010) VERA L. NUNES et al.   MOLECULAR ECOLOGY

Identifying footprints of selection in stocked brown trout populations: a spatio-temporal approach

(2010) MICHAEL M. HANSEN et al.   MOLECULAR ECOLOGY

Back to nature: ecological genomics of loblolly pine (Pinus taeda, Pinaceae)

(2010) ANDREW J. ECKERT et al.   MOLECULAR ECOLOGY

Landscape genetics: where are we now?

(2010) ANDREW STORFER et al.   MOLECULAR ECOLOGY

Taxon-specific PCR for DNA barcoding arthropod prey in bat faeces

(2010) MATT R. K. ZEALE et al.   Molecular Ecology Resources

The population genomics of plant adaptation

(2010) Mathieu Siol et al.   NEW PHYTOLOGIST

Tracking footprints of artificial selection in the dog genome

(2010) J. M. Akey et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-wide association mapping to candidate polymorphism resolution in the unsequenced barley genome

(2010) J. Cockram et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Association mapping of local climate-sensitive quantitative trait loci in Arabidopsis thaliana

(2010) Y. Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Clock polymorphism in Pacific salmon: evidence for variable selection along a latitudinal gradient

(2010) K. G. O'Malley et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Parallel adaptive evolution of Atlantic cod on both sides of the Atlantic Ocean in response to temperature

(2010) I. R. Bradbury et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

How pathogens drive genetic diversity: MHC, mechanisms and misunderstandings

(2010) L. G. Spurgin et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Conserved flanking microsatellite sequences (ReFS) differentiate between Lepidoptera species, and provide insight into microsatellite evolution

(2010) DARIA MOLODSTOVA et al.   SYSTEMATIC ENTOMOLOGY

Adaptation genomics: the next generation

(2010) Jessica Stapley et al.   TRENDS IN ECOLOGY & EVOLUTION

Conservation genetics in transition to conservation genomics

(2010) N. Joop Ouborg et al.   TRENDS IN GENETICS

Frontiers in identifying conservation units: from neutral markers to adaptive genetic variation

(2009) B. Gebremedhin et al.   ANIMAL CONSERVATION

Genetic Consequences of Range Expansions

(2009) Laurent Excoffier et al.   Annual Review of Ecology Evolution and Systematics

Genotyping Technologies for Genetic Research

(2009) Jiannis Ragoussis   Annual Review of Genomics and Human Genetics

Does reduced MHC diversity decrease viability of vertebrate populations?

(2009) Jacek Radwan et al.   BIOLOGICAL CONSERVATION

Are peripheral populations special? Congruent patterns in two butterfly species

(2009) Anna Cassel-Lundhagen et al.   ECOGRAPHY

Community genetics: resource addition has opposing effects on genetic and species diversity in a 150-year experiment

(2009) Jonathan Silvertown et al.   ECOLOGY LETTERS

The genetic structure of populations of an invading pest fruit fly, Bactrocera tryoni, at the species climatic range limit

(2009) A S Gilchrist et al.   HEREDITY

Detecting loci under selection in a hierarchically structured population

(2009) L Excoffier et al.   HEREDITY

Estimating the Rate of Adaptive Molecular Evolution in the Presence of Slightly Deleterious Mutations and Population Size Change

(2009) A. Eyre-Walker et al.   MOLECULAR BIOLOGY AND EVOLUTION

A quantitative review of heterozygosity-fitness correlations in animal populations

(2009) J. R. CHAPMAN et al.   MOLECULAR ECOLOGY

Efficiency of selection, as measured by single nucleotide polymorphism variation, is dependent on inbreeding rate inDrosophila melanogaster

(2009) DITTE DEMONTIS et al.   MOLECULAR ECOLOGY

Comparing geographical genetic differentiation between candidate and noncandidate loci for adaptation strengthens support for parallel ecological divergence in the marine snailLittorina saxatilis

(2009) J. GALINDO et al.   MOLECULAR ECOLOGY

Divergent selection and heterogeneous genomic divergence

(2009) PATRIK NOSIL et al.   MOLECULAR ECOLOGY

Genome-wide scans for footprints of natural selection

(2009) T. K. Oleksyk et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Land ahead: using genome scans to identify molecular markers of adaptive relevance

(2009) Rolf Holderegger et al.   Plant Ecology & Diversity

Research on inbreeding in the ‘omic’ era

(2009) Torsten N. Kristensen et al.   TRENDS IN ECOLOGY & EVOLUTION

Decoupled differentiation of gene expression and coding sequence among Drosophila populations

(2008) Michael H. Kohn et al.   GENES & GENETIC SYSTEMS

Characterising functionally important and ecologically meaningful genetic diversity using a candidate gene approach

(2008) Stuart B. Piertney et al.   GENETICA

A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective

(2008) M. Foll et al.   GENETICS

Five questions on ecological speciation addressed with individual-based simulations

(2008) X. THIBERT-PLANTE et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

To what extent do microsatellite markers reflect genome-wide genetic diversity in natural populations?

(2008) ÜLO VÄLI et al.   MOLECULAR ECOLOGY

Genetic variation across species’ geographical ranges: the central–marginal hypothesis and beyond

(2008) C. G. ECKERT et al.   MOLECULAR ECOLOGY

Spatial analysis method (sam): a software tool combining molecular and environmental data to identify candidate loci for selection

(2008) STÉPHANE JOOST et al.   Molecular Ecology Resources

Next-generation DNA sequencing

(2008) Jay Shendure et al.   NATURE BIOTECHNOLOGY

Reduced Responses to Selection After Species Range Expansion

(2008) B. Pujol et al.   SCIENCE

Environmental change and the option value of genetic diversity

(2008) Alistair S. Jump et al.   TRENDS IN PLANT SCIENCE

Sequencing breakthroughs for genomic ecology and evolutionary biology

(2007) MATTHEW E. HUDSON   Molecular Ecology Resources