Exploring the environmental diversity of kinetoplastid flagellates in the high-throughput DNA sequencing era

Environmental genes and genomes: understanding the differences and challenges in the approaches and software for their analyses

(2015) Marie Lisandra Zepeda Mendoza et al.   BRIEFINGS IN BIOINFORMATICS

Diplonemids

(2015) Julius Lukeš et al.   CURRENT BIOLOGY

Next generation sequencing for characterizing biodiversity: promises and challenges

(2015) François Pompanon et al.   GENETICA

A tsetse and tabanid fly survey of African great apes habitats reveals the presence of a novel trypanosome lineage but the absence of Trypanosoma brucei

(2015) Jan Votýpka et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

Lineage-specific activities of a multipotent mitochondrion of trypanosomatid flagellates

(2015) Ingrid Škodová-Sveráková et al.   MOLECULAR MICROBIOLOGY

Eukaryotic plankton diversity in the sunlit ocean

(2015) C. de Vargas et al.   SCIENCE

Determinants of community structure in the global plankton interactome

(2015) G. Lima-Mendez et al.   SCIENCE

Anuran trypanosomes: phylogenetic evidence for new clades in Brazil

(2015) Juliana I. G. da S. Ferreira et al.   SYSTEMATIC PARASITOLOGY

New Approaches to Systematics of Trypanosomatidae: Criteria for Taxonomic (Re)description

(2015) Jan Votýpka et al.   TRENDS IN PARASITOLOGY

A toolkit enabling efficient, scalable and reproducible gene tagging in trypanosomatids

(2015) S. Dean et al.   Open Biology

Genome and Phylogenetic Analyses of Trypanosoma evansi Reveal Extensive Similarity to T. brucei and Multiple Independent Origins for Dyskinetoplasty

(2015) Jason Carnes et al.   PLoS Neglected Tropical Diseases

Single-cell transcriptomics for microbial eukaryotes

(2014) Martin Kolisko et al.   CURRENT BIOLOGY

A bioinformatics approach to reanalyze the genome annotation of kinetoplastid protozoan parasite Leishmania donovani

(2014) Harsh Pawar et al.   GENOMICS

Primer pairs for the specific environmental detection and T-RFLP analysis of the ubiquitous flagellate taxa Chrysophyceae and Kinetoplastea

(2014) Karin Glaser et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Evolution of parasitism in kinetoplastid flagellates

(2014) Julius Lukeš et al.   MOLECULAR AND BIOCHEMICAL PARASITOLOGY

Morphological and molecular characterization of a marine fish trypanosome from South Africa, including its development in a leech vector

(2014) Polly M Hayes et al.   Parasites & Vectors

Host specificity, pathogenicity, and mixed infections of trypanoplasms from freshwater fishes

(2014) Alexander Losev et al.   PARASITOLOGY RESEARCH

Environmental Status Assessment Using DNA Metabarcoding: Towards a Genetics Based Marine Biotic Index (gAMBI)

(2014) Eva Aylagas et al.   PLoS One

Molecular revision of the genus Wallaceina

(2014) Alexei Yu. Kostygov et al.   PROTIST

Kentomonas gen. n., a New Genus of Endosymbiont-containing Trypanosomatids of Strigomonadinae subfam. n.

(2014) Jan Votýpka et al.   PROTIST

The others: our biased perspective of eukaryotic genomes

(2014) Javier del Campo et al.   TRENDS IN ECOLOGY & EVOLUTION

Genome of the Avirulent Human-Infective Trypanosome—Trypanosoma rangeli

(2014) Patrícia Hermes Stoco et al.   PLoS Neglected Tropical Diseases

Studies on protozoa in ancient remains - A Review

(2013) Liesbeth Frías et al.   MEMORIAS DO INSTITUTO OSWALDO CRUZ

Growing diversity of trypanosomatid parasites of flies (Diptera: Brachycera): Frequent cosmopolitism and moderate host specificity

(2013) Jiří Týč et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Phylogenetic Affiliation of SSU rRNA Genes Generated by Massively Parallel Sequencing: New Insights into the Freshwater Protist Diversity

(2013) Najwa Taib et al.   PLoS One

Diversity of Trypanosomatids (Kinetoplastea: Trypanosomatidae) Parasitizing Fleas (Insecta: Siphonaptera) and Description of a New Genus Blechomonas gen. n.

(2013) Jan Votýpka et al.   PROTIST

Atypical Human Infections by Animal Trypanosomes

(2013) Philippe Truc et al.   PLoS Neglected Tropical Diseases

Measuring the microbiome: perspectives on advances in DNA-based techniques for exploring microbial life

(2012) J. A. Foster et al.   BRIEFINGS IN BIOINFORMATICS

Phylogenetic relationships of trypanosomatids parasitising true bugs (Insecta: Heteroptera) in sub-Saharan Africa

(2012) Jan Votýpka et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

Global biogeography of highly diverse protistan communities in soil

(2012) Scott T Bates et al.   ISME Journal

Accuracy of protist diversity assessments: morphology compared with cloning and direct pyrosequencing of 18S rRNA genes and ITS regions using the conspicuous tintinnid ciliates as a case study

(2012) Charles Bachy et al.   ISME Journal

The Revised Classification of Eukaryotes

(2012) Sina M. Adl et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

New environmental metabarcodes for analysing soil DNA: potential for studying past and present ecosystems

(2012) LAURA S. EPP et al.   MOLECULAR ECOLOGY

Towards next-generation biodiversity assessment using DNA metabarcoding

(2012) PIERRE TABERLET et al.   MOLECULAR ECOLOGY

Genomic approaches to studying the human microbiota

(2012) George M. Weinstock   NATURE

Molecular Phylogenetic Redefinition of Herpetomonas (Kinetoplastea, Trypanosomatidae), a Genus of Insect Parasites Associated with Flies

(2012) Tarcilla C. Borghesan et al.   PROTIST

CBOL Protist Working Group: Barcoding Eukaryotic Richness beyond the Animal, Plant, and Fungal Kingdoms

(2012) Jan Pawlowski et al.   PLOS BIOLOGY

Biodiversity of avian trypanosomes

(2011) Lenka Zídková et al.   INFECTION GENETICS AND EVOLUTION

Analysis of the community structure of abyssal kinetoplastids revealed similar communities at larger spatial scales

(2011) Faezeh Shah Salani et al.   ISME Journal

Trypanosomatids are common and diverse parasites of Drosophila

(2011) L. WILFERT et al.   PARASITOLOGY

Eukaryotic Richness in the Abyss: Insights from Pyrotag Sequencing

(2011) Jan Pawlowski et al.   PLoS One

Phylogenetic Validation of the Genera Angomonas and Strigomonas of Trypanosomatids Harboring Bacterial Endosymbionts with the Description of New Species of Trypanosomatids and of Proteobacterial Symbionts

(2011) Marta M.G. Teixeira et al.   PROTIST

Metagenomic Analysis of Taxa Associated with Lutzomyia longipalpis, Vector of Visceral Leishmaniasis, Using an Unbiased High-Throughput Approach

(2011) Christina B. McCarthy et al.   PLoS Neglected Tropical Diseases

Current state and perspectives of fungal DNA barcoding and rapid identification procedures

(2010) Dominik Begerow et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Comparative analysis between protist communities from the deep-sea pelagic ecosystem and specific deep hydrothermal habitats

(2010) Anne-Laure Sauvadet et al.   ENVIRONMENTAL MICROBIOLOGY

Two New Species of Trypanosomatid Parasites Isolated from Heteroptera in Costa Rica

(2010) DMITRI A. MASLOV et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Diversity in a hidden world: potential and limitation of next-generation sequencing for surveys of molecular diversity of eukaryotic microorganisms

(2010) RALPH MEDINGER et al.   MOLECULAR ECOLOGY

Environmental Barcoding Reveals Massive Dinoflagellate Diversity in Marine Environments

(2010) Rowena F. Stern et al.   PLoS One

Barcoding Tetrahymena: Discriminating Species and Identifying Unknowns Using the Cytochrome c Oxidase Subunit I (cox-1) Barcode

(2010) Chandni P. Kher et al.   PROTIST

Sequencing free-living protists: the case for metagenomics

(2009) Scott C. Dawson et al.   ENVIRONMENTAL MICROBIOLOGY

Selective recovery of the cultivation-prone components from mixed trypanosomatid infections: a case of several novel species isolated from Neotropical Heteroptera

(2009) V. Y. Yurchenko et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Mapping the Tree of Life: Progress and Prospects

(2009) N. R. Pace   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Probing into the diversity of trypanosomatid flagellates parasitizing insect hosts in South-West China reveals both endemism and global dispersal

(2009) Jan Votýpka et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Large-scale patterns in biodiversity of microbial eukaryotes from the abyssal sea floor

(2009) F. Scheckenbach et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Barcoding Amoebae: Comparison of SSU, ITS and COI Genes as Tools for Molecular Identification of Naked Lobose Amoebae

(2009) Elena Nassonova et al.   PROTIST

Microscopic and Molecular Studies of the Diversity of Free-Living Protozoa in Meat-Cutting Plants

(2008) M. J. M. Vaerewijck et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Kinetoplastid genomics: The thin end of the wedge

(2008) Nancy R. Sturm et al.   INFECTION GENETICS AND EVOLUTION

Kinetoplastids: related protozoan pathogens, different diseases

(2008) Ken Stuart et al.   JOURNAL OF CLINICAL INVESTIGATION

Historical Mammal Extinction on Christmas Island (Indian Ocean) Correlates with Introduced Infectious Disease

(2008) Kelly B. Wyatt et al.   PLoS One

Morphological Discordance of the New Trypanosomatid Species Phylogenetically Associated with the Genus Crithidia

(2007) Vyacheslav Y. Yurchenko et al.   PROTIST