Efficient key pathway mining: combining networks and OMICS data

Genome-scale analysis of aberrant DNA methylation in colorectal cancer

(2011) T. Hinoue et al.   GENOME RESEARCH

PSICQUIC and PSISCORE: accessing and scoring molecular interactions

(2011) Bruno Aranda et al.   NATURE METHODS

CoryneRegNet 6.0--Updated database content, new analysis methods and novel features focusing on community demands

(2011) J. Pauling et al.   NUCLEIC ACIDS RESEARCH

RhizoRegNet—A database of rhizobial transcription factors and regulatory networks

(2010) Elizaveta Krol et al.   JOURNAL OF BIOTECHNOLOGY

Partitioning biological data with transitivity clustering

(2010) Tobias Wittkop et al.   NATURE METHODS

On the power and limits of evolutionary conservation—unraveling bacterial gene regulatory networks

(2010) Jan Baumbach   NUCLEIC ACIDS RESEARCH

Database resources of the National Center for Biotechnology Information

(2010) E. W. Sayers et al.   NUCLEIC ACIDS RESEARCH

HiNO: An Approach for Inferring Hierarchical Organization from Regulatory Networks

(2010) Mara L. Hartsperger et al.   PLoS One

Linking Cytoscape and the corynebacterial reference database CoryneRegNet

(2009) Jan Baumbach et al.   BMC GENOMICS

Runtime Analysis of an Ant Colony Optimization Algorithm for TSP Instances

(2009) Yuren Zhou   IEEE TRANSACTIONS ON EVOLUTIONARY COMPUTATION

From Corynebacterium glutamicum to Mycobacterium tuberculosis--towards transfers of gene regulatory networks and integrated data analyses with MycoRegNet

(2009) J. Krawczyk et al.   NUCLEIC ACIDS RESEARCH

Towards the integrated analysis, visualization and reconstruction of microbial gene regulatory networks

(2008) J. Baumbach et al.   BRIEFINGS IN BIOINFORMATICS

Analysis of different MMAS ACO algorithms on unimodal functions and plateaus

(2008) Frank Neumann et al.   Swarm Intelligence