Strategies for highly sensitive biomarker detection by Rolling Circle Amplification of signals from nucleic acid composed sensors

Biological Markers in DCIS and Risk of Breast Recurrence: A Systematic Review

(2012) Sara A. Lari et al.   Journal of Cancer

Detection of small RNA molecules by a combination of branched rolling circle amplification and bioluminescent pyrophosphate assay

(2011) Yasumasa Mashimo et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Single-Molecule DNA Patterning and Detection by Padlock Probing and Rolling Circle Amplification in Microchannels for Analysis of Small Sample Volumes

(2011) Yo Tanaka et al.   ANALYTICAL CHEMISTRY

Self-Assembly of a Bifunctional DNA Carrier for Drug Delivery

(2011) Kelong Wang et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Genetic Variants in DNA Repair Predicts the Survival of Patients with Esophageal Cancer

(2011) Jang-Ming Lee et al.   ANNALS OF SURGERY

Single-cell assays

(2011) Declan Ryan et al.   Biomicrofluidics

Protein Signaling Networks from Single Cell Fluctuations and Information Theory Profiling

(2011) Young Shik Shin et al.   BIOPHYSICAL JOURNAL

Cocaine detection via rolling circle amplification of short DNA strand separated by magnetic beads

(2011) Cuiping Ma et al.   BIOSENSORS & BIOELECTRONICS

DNA-guided display of proteins and protein ligands for the interrogation of biology

(2011) Franziska Diezmann et al.   CHEMICAL SOCIETY REVIEWS

DNA origami: a quantum leap for self-assembly of complex structures

(2011) Thomas Tørring et al.   CHEMICAL SOCIETY REVIEWS

Prognostic and predictive impact of DNA mismatch repair in the management of colorectal cancer

(2011) Frank A Sinicrope et al.   Future Oncology

Selective Biomolecular Nanoarrays for Parallel Single-Molecule Investigations

(2011) Matteo Palma et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Miniaturized isothermal nucleic acid amplification, a review

(2011) Peter J. Asiello et al.   LAB ON A CHIP

Fabrication of DNA Polymer Brush Arrays by Destructive Micropatterning and Rolling-Circle Amplification

(2011) Kristopher D. Barbee et al.   MACROMOLECULAR BIOSCIENCE

Multiplexed Homogeneous Proximity Ligation Assays for High-throughput Protein Biomarker Research in Serological Material

(2011) Martin Lundberg et al.   MOLECULAR & CELLULAR PROTEOMICS

Nanolithographic Control of the Spatial Organization of Cellular Adhesion Receptors at the Single-Molecule Level

(2011) Mark Schvartzman et al.   NANO LETTERS

Cells of origin in cancer

(2011) Jane E. Visvader   NATURE

Single-cell genomics

(2011) Tomer Kalisky et al.   NATURE METHODS

Towards a point-of-care test for active tuberculosis: obstacles and opportunities

(2011) Ruth McNerney et al.   NATURE REVIEWS MICROBIOLOGY

Evolutionary Dynamics of Intratumor Heterogeneity

(2011) Yoh Iwasa et al.   PLoS One

Validation of a real-time polymerase chain reaction assay for the detection of Salmonella in crops of broiler chickens

(2011) C. Mainali et al.   POULTRY SCIENCE

Biomarkers in frontotemporal lobar degenerations—Progress and challenges

(2011) William T. Hu et al.   PROGRESS IN NEUROBIOLOGY

Study of gene-specific DNA repair in the comet assay with padlock probes and rolling circle amplification

(2011) Sara Henriksson et al.   TOXICOLOGY LETTERS

Development of an in situ assay for simultaneous detection of the genomic and replicative form of PCV2 using padlock probes and rolling circle amplification

(2011) Sara Henriksson et al.   Virology Journal

Isothermal DNA amplification in bioanalysis: strategies and applications

(2011) Joonyul Kim et al.   Bioanalysis

A Novel Secondary DNA Binding Site in Human Topoisomerase I Unravelled by using a 2D DNA Origami Platform

(2010) Ramesh Subramani et al.   ACS Nano

DNA-based nano-sized systems for pharmaceutical and biomedical applications

(2010) Makiya Nishikawa et al.   ADVANCED DRUG DELIVERY REVIEWS

Direct detection of green fluorescent protein messenger RNA expressed in Escherichia coli by rolling circle amplification

(2010) Hirokazu Takahashi et al.   ANALYTICAL BIOCHEMISTRY

Triggered Polycatenated DNA Scaffolds for DNA Sensors and Aptasensors by a Combination of Rolling Circle Amplification and DNAzyme Amplification

(2010) Sai Bi et al.   ANALYTICAL CHEMISTRY

Sensitive Detection of Nucleic Acids with Rolling Circle Amplification and Surface-Enhanced Raman Scattering Spectroscopy

(2010) Juan Hu et al.   ANALYTICAL CHEMISTRY

Electrochemical Aptameric Recognition System for a Sensitive Protein Assay Based on Specific Target Binding-Induced Rolling Circle Amplification

(2010) Zai-Sheng Wu et al.   ANALYTICAL CHEMISTRY

Universal Aptameric System for Highly Sensitive Detection of Protein Based on Structure-Switching-Triggered Rolling Circle Amplification

(2010) Zai-Sheng Wu et al.   ANALYTICAL CHEMISTRY

Rolling Circle Amplification Combined with Gold Nanoparticle Aggregates for Highly Sensitive Identification of Single-Nucleotide Polymorphisms

(2010) Jishan Li et al.   ANALYTICAL CHEMISTRY

Cascade Signal Amplification Strategy for Subattomolar Protein Detection by Rolling Circle Amplification and Quantum Dots Tagging

(2010) Wei Cheng et al.   ANALYTICAL CHEMISTRY

Analysis of Genes, Transcripts, and Proteins via DNA Ligation

(2010) Tim Conze et al.   Annual Review of Analytical Chemistry

Nanomaterials Based on DNA

(2010) Nadrian C. Seeman   Annual Review of Biochemistry

Droplet-based microfluidic platforms for single T cell secretion analysis of IL-10 cytokine

(2010) Tania Konry et al.   BIOSENSORS & BIOELECTRONICS

Sensitive and isothermal electrochemiluminescence gene-sensing of Listeria monocytogenes with hyperbranching rolling circle amplification technology

(2010) Yi Long et al.   BIOSENSORS & BIOELECTRONICS

In situ quantification of HER2–protein tyrosine kinase 6 (PTK6) protein–protein complexes in paraffin sections from breast cancer tissues

(2010) M Aubele et al.   BRITISH JOURNAL OF CANCER

The Ability of Biomarkers to Predict Systemic Progression in Men with High-Risk Prostate Cancer Treated Surgically Is Dependent on ERG Status

(2010) R. J. Karnes et al.   CANCER RESEARCH

A facile scanometric strategy for ultrasensitive detection of protein using aptamer-initiated rolling circle amplification

(2010) Wei Cheng et al.   CHEMICAL COMMUNICATIONS

Inside Cover: Programmed-Assembly System Using DNA Jigsaw Pieces (Chem. Eur. J. 18/2010)

(2010) Masayuki Endo et al.   CHEMISTRY-A EUROPEAN JOURNAL

DNA-Based Micelles: Synthesis, Micellar Properties and Size-Dependent Cell Permeability

(2010) Haipeng Liu et al.   CHEMISTRY-A EUROPEAN JOURNAL

Biosensors as rapid diagnostic tests for tropical diseases

(2010) Fernando Sérgio Rodrigues Ribeiro Teles et al.   CRITICAL REVIEWS IN CLINICAL LABORATORY SCIENCES

Detection of denitrification genes by in situ rolling circle amplification-fluorescence in situ hybridization to link metabolic potential with identity inside bacterial cells

(2010) Tatsuhiko Hoshino et al.   ENVIRONMENTAL MICROBIOLOGY

Identification of efficient fluorophores for the direct labeling of DNA via rolling circle amplification (RCA) polymerase φ29

(2010) Lena Linck et al.   EUROPEAN JOURNAL OF MEDICINAL CHEMISTRY

The origins of cancer robustness and evolvability

(2010) Tianhai Tian et al.   Integrative Biology

Rapid identification and detection of pine pathogenic fungi associated with mountain pine beetles by padlock probes

(2010) Clement K.M. Tsui et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Real-Space Transmission Electron Microscopy Investigations of Attachment of Functionalized Magnetic Nanoparticles to DNA-Coils Acting as a Biosensor

(2010) Sultan Akhtar et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Discrete and Active Enzyme Nanoarrays on DNA Origami Scaffolds Purified by Affinity Tag Separation

(2010) Kentaro Numajiri et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Rapid detection of Newcastle disease virus replication in embryonated chicken eggs using quantitative real time polymerase chain reaction

(2010) V.P. Gopinath et al.   JOURNAL OF VIROLOGICAL METHODS

Massively parallel detection of gene expression in single cells using subnanolitre wells

(2010) Yuan Gong et al.   LAB ON A CHIP

Microbead-based rolling circle amplification in a microchip for sensitive DNA detection

(2010) Kae Sato et al.   LAB ON A CHIP

Smad2 and Smad6 as predictors of overall survival in oral squamous cell carcinoma patients

(2010) Flavia RR Mangone et al.   Molecular Cancer

Immobilization and One-Dimensional Arrangement of Virus Capsids with Nanoscale Precision Using DNA Origami

(2010) Nicholas Stephanopoulos et al.   NANO LETTERS

Structural DNA Nanotechnology: Growing Along withNano Letters

(2010) Nadrian C. Seeman   NANO LETTERS

DNA-incorporating nanomaterials in biotechnological applications

(2010) Andrea Stadler et al.   Nanomedicine

Recent advances in DNA-based directed assembly on surfaces

(2010) Albert M. Hung et al.   Nanoscale

In situ detection and genotyping of individual mRNA molecules

(2010) Chatarina Larsson et al.   NATURE METHODS

Single-molecule chemical reactions on DNA origami

(2010) Niels V. Voigt et al.   Nature Nanotechnology

Prediction and design of DNA and RNA structures

(2010) Ebbe Sloth Andersen   New Biotechnology

A dumbbell probe-mediated rolling circle amplification strategy for highly sensitive microRNA detection

(2010) Yuntao Zhou et al.   NUCLEIC ACIDS RESEARCH

Single molecule analysis of combinatorial splicing

(2010) Tim Conze et al.   NUCLEIC ACIDS RESEARCH

Direct detection of RNA in vitro and in situ by target-primed RCA: The impact of E. coli RNase III on the detection efficiency of RNA sequences distanced far from the 3'-end

(2010) E. Merkiene et al.   RNA

Ultrasensitive Detection of Low-Abundance Surface-Marker Protein Using Isothermal Rolling Circle Amplification in a Microfluidic Nanoliter Platform

(2010) Tania Konry et al.   Small

An On-Nanoparticle Rolling-Circle Amplification Platform for Ultrasensitive Protein Detection in Biological Fluids

(2010) Juan Yan et al.   Small

Multiplexed Detection of Site Specific Recombinase and DNA Topoisomerase Activities at the Single Molecule Level

(2009) Felicie Faucon Andersen et al.   ACS Nano

Nucleic acid aptamers for biosensors and bio-analytical applications

(2009) Kwame Sefah et al.   ANALYST

Attomole DNA detection assay via rolling circle amplification and single molecule detection

(2009) Eric Schopf et al.   ANALYTICAL BIOCHEMISTRY

Multiplex Detection of DNA Sequences Using the Volume-Amplified Magnetic Nanobead Detection Assay

(2009) Mattias Strömberg et al.   ANALYTICAL CHEMISTRY

Stand-Alone Rolling Circle Amplification Combined with Capillary Electrophoresis for Specific Detection of Small RNA

(2009) Ni Li et al.   ANALYTICAL CHEMISTRY

Colorimetric Sensing by Using Allosteric-DNAzyme-Coupled Rolling Circle Amplification and a Peptide Nucleic Acid-Organic Dye Probe

(2009) M. Monsur Ali et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Icosahedral DNA Nanocapsules by Modular Assembly

(2009) Dhiraj Bhatia et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Highly Sensitive Determination of microRNA Using Target-Primed and Branched Rolling-Circle Amplification

(2009) Yongqiang Cheng et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

DNA copy number profiles of primary tumors as predictors of response to chemotherapy in advanced colorectal cancer

(2009) C. Postma et al.   ANNALS OF ONCOLOGY

Fluorescent oligonucleotide probe based on G-quadruplex scaffold for signal-on ultrasensitive protein assay

(2009) Zai-Sheng Wu et al.   BIOMATERIALS

A label-free strategy for SNP detection with high fidelity and sensitivity based on ligation-rolling circle amplification and intercalating of methylene blue

(2009) Songbai Zhang et al.   BIOSENSORS & BIOELECTRONICS

Magnetic beads based rolling circle amplification–electrochemiluminescence assay for highly sensitive detection of point mutation

(2009) Qiang Su et al.   BIOSENSORS & BIOELECTRONICS

Rapid detection of ERG11 gene mutations in clinical Candida albicans isolates with reduced susceptibility to fluconazole by rolling circle amplification and DNA sequencing

(2009) Huiping Wang et al.   BMC MICROBIOLOGY

Precisely Programmed and Robust 2D Streptavidin Nanoarrays by Using Periodical Nanometer-Scale Wells Embedded in DNA Origami Assembly

(2009) Akinori Kuzuya et al.   CHEMBIOCHEM

Design and construction of a box-shaped 3D-DNA origami

(2009) Akinori Kuzuya et al.   CHEMICAL COMMUNICATIONS

Bright-Field Microscopy Visualization of Proteins and Protein Complexes by In Situ Proximity Ligation with Peroxidase Detection

(2009) A. Zieba et al.   CLINICAL CHEMISTRY

Biomarkers of Disease Activity, Cure, and Relapse in Tuberculosis

(2009) T. Mark Doherty et al.   CLINICS IN CHEST MEDICINE

Evidence of heterogeneity within colorectal liver metastases for allelic losses, mRNA level expression and in vitro response to chemotherapeutic agents

(2009) Nicolas Goasguen et al.   INTERNATIONAL JOURNAL OF CANCER

Cancer stem cells: Cell culture, markers, and targets for new therapies

(2009) Candace A. Gilbert et al.   JOURNAL OF CELLULAR BIOCHEMISTRY

Multivalent Protein Binding and Precipitation by Self-Assembling Molecules on a DNA Pentaplex Scaffold

(2009) Brooke A. Rosenzweig et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

DNA origami: Fold, stick, and beyond

(2009) Akinori Kuzuya et al.   Nanoscale

DNA origami as a nanoscale template for protein assembly

(2009) Anton Kuzyk et al.   NANOTECHNOLOGY

Self-assembly of a nanoscale DNA box with a controllable lid

(2009) Ebbe S. Andersen et al.   NATURE

Novel application of Phi29 DNA polymerase: RNA detection and analysis in vitro and in situ by target RNA-primed RCA

(2009) A. Lagunavicius et al.   RNA

Single-Molecule Detection of Human Topoisomerase I Cleavage−Ligation Activity

(2008) Magnus Stougaard et al.   ACS Nano

Chemiluminescent detection of DNA hybridization and single-nucleotide polymorphisms on a solid surface using target-primed rolling circle amplification

(2008) Zhengping Li et al.   ANALYST

Electrochemical immunosensor of platelet-derived growth factor with aptamer-primed polymerase amplification

(2008) Yong Huang et al.   ANALYTICAL BIOCHEMISTRY

Rolling Circle Amplification and Circle-to-circle Amplification of a Specific Gene Integrated with Electrophoretic Analysis on a Single Chip

(2008) Laili Mahmoudian et al.   ANALYTICAL CHEMISTRY

Microchip Electrophoresis for Specific Gene Detection of the Pathogenic Bacteria V. cholerae by Circle-to-Circle Amplification

(2008) Laili MAHMOUDIAN et al.   ANALYTICAL SCIENCES

Rolling Circle Amplification: Applications in Nanotechnology and Biodetection with Functional Nucleic Acids

(2008) Weian Zhao et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

CD133+CD44+ Population Efficiently Enriches Colon Cancer Initiating Cells

(2008) Naotsugu Haraguchi et al.   ANNALS OF SURGICAL ONCOLOGY

Sensitive and selective viral DNA detection assay via microbead-based rolling circle amplification

(2008) Eric Schopf et al.   BIOORGANIC & MEDICINAL CHEMISTRY LETTERS

Microscopic mechanisms influencing the volume amplified magnetic nanobead detection assay

(2008) M. Strömberg et al.   BIOSENSORS & BIOELECTRONICS

Novel and Highly Recurrent Chromosomal Alterations in Sezary Syndrome

(2008) M. H. Vermeer et al.   CANCER RESEARCH

BlobFinder, a tool for fluorescence microscopy image cytometry

(2008) A. Allalou et al.   COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE

Rapid Identification and Differentiation of Trichophyton Species, Based on Sequence Polymorphisms of the Ribosomal Internal Transcribed Spacer Regions, by Rolling-Circle Amplification

(2008) F. Kong et al.   JOURNAL OF CLINICAL MICROBIOLOGY

In Situ Detection of Anaplasma spp. by DNA Target-Primed Rolling-Circle Amplification of a Padlock Probe and Intracellular Colocalization with Immunofluorescently Labeled Host Cell von Willebrand Factor

(2008) H. L. Wamsley et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Sensitive Molecular Diagnostics Using Volume-Amplified Magnetic Nanobeads

(2008) Mattias Strömberg et al.   NANO LETTERS

Midzone activation of aurora B in anaphase produces an intracellular phosphorylation gradient

(2008) Brian G. Fuller et al.   NATURE

Ligation-based molecular tools for lab-on-a-chip devices

(2008) Jonas Melin et al.   New Biotechnology

Studying copy number variations using a nanofluidic platform

(2008) Jian Qin et al.   NUCLEIC ACIDS RESEARCH

Phosphorylation of inositol 1,4,5-trisphosphate receptors by protein kinase B/Akt inhibits Ca2+ release and apoptosis

(2008) T. Szado et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Assembling Materials with DNA as the Guide

(2008) F. A. Aldaye et al.   SCIENCE

Protein detection via direct enzymatic amplification of short DNA aptamers

(2007) Nicholas O. Fischer et al.   ANALYTICAL BIOCHEMISTRY

Fluorescence-based detection of short DNA sequences under non-denaturing conditions

(2007) Irina V. Smolina et al.   BIOORGANIC & MEDICINAL CHEMISTRY

Assessment of the diagnostic potential of immuno-RCA in 96-well ELISA plates for foot-and-mouth disease virus

(2007) Wesley Van Dessel et al.   JOURNAL OF VIROLOGICAL METHODS