SeaBase: A Multispecies Transcriptomic Resource and Platform for Gene Network Inference

The Slipper Snail, Crepidula: An Emerging Lophotrochozoan Model System

(2016) Jonathan J. Henry et al.   BIOLOGICAL BULLETIN

Very Long-Lived Mollusks Confirm 17th Century AD Tephra-Based Radiocarbon Reservoir Ages for North Icelandic Shelf Waters

(2016) Alan D Wanamaker et al.   RADIOCARBON

Production of a reference transcriptome and transcriptomic database (EdwardsiellaBase) for the lined sea anemone, Edwardsiella lineata, a parasitic cnidarian

(2014) Derek J Stefanik et al.   BMC GENOMICS

A cleavage clock regulates features of lineage-specific differentiation in the development of a basal branching metazoan, the ctenophore Mnemiopsis leidyi

(2014) Antje HL Fischer et al.   EvoDevo

Transcriptomics in the RNA-seq era

(2013) Paul A McGettigan   CURRENT OPINION IN CHEMICAL BIOLOGY

A report from the second Nematostella vectensis research conference

(2013) Thomas D. Gilmore et al.   DEVELOPMENT GENES AND EVOLUTION

Cyclic AMP promotes axon regeneration, lesion repair and neuronal survival in lampreys after spinal cord injury

(2013) Billy Y.B. Lau et al.   EXPERIMENTAL NEUROLOGY

Employing BAC-reporter constructs in the sea anemone Nematostella vectensis

(2013) Antje H. L. Fischer et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

Sepia officinalis: A new biological model for eco-evo-devo studies

(2013) Yann Bassaglia et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Collecting, rearing, spawning and inducing regeneration of the starlet sea anemone, Nematostella vectensis

(2013) Derek J Stefanik et al.   Nature Protocols

Characterizing the spatiotemporal expression of RNAs and proteins in the starlet sea anemone, Nematostella vectensis

(2013) Francis S Wolenski et al.   Nature Protocols

The 2014Nucleic Acids ResearchDatabase Issue and an updated NAR online Molecular Biology Database Collection

(2013) Xosé M. Fernández-Suárez et al.   NUCLEIC ACIDS RESEARCH

Annelids in evolutionary developmental biology and comparative genomics

(2013) C. Mcdougall et al.   Parasite

RNA-Seq Reveals Dynamic Changes of Gene Expression in Key Stages of Intestine Regeneration in the Sea Cucumber Apostichopus japonicas

(2013) Lina Sun et al.   PLoS One

Comparative gene expression supports the origin of the incisor and molar process from a single endite in the mandible of the red flour beetle Tribolium castaneum

(2013) Joshua F Coulcher et al.   EvoDevo

A quantitative reference transcriptome for Nematostella vectensis early embryonic development: a pipeline for de novo assembly in emerging model systems

(2013) Sarah Tulin et al.   EvoDevo

Mosaic: making biological sense of complex networks

(2012) C. Zhang et al.   BIOINFORMATICS

Developing the anemone Aiptasia as a tractable model for cnidarian-dinoflagellate symbiosis: the transcriptome of aposymbiotic A. pallida

(2012) Erik M Lehnert et al.   BMC GENOMICS

Sequencing and Analysis of the Mediterranean Amphioxus (Branchiostoma lanceolatum) Transcriptome

(2012) Silvan Oulion et al.   PLoS One

Molecular analysis of the amphioxus frontal eye unravels the evolutionary origin of the retina and pigment cells of the vertebrate eye

(2012) P. Vopalensky et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cleavage pattern and fate map of the mesentoblast, 4d, in the gastropod Crepidula: a hallmark of spiralian development

(2012) Deirdre C Lyons et al.   EvoDevo

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Uncoupling of complex regulatory patterning during evolution of larval development in echinoderms

(2011) Kristen A Yankura et al.   BMC BIOLOGY

Evolutionary crossroads in developmental biology: amphioxus

(2011) S. Bertrand et al.   DEVELOPMENT

Evolutionary crossroads in developmental biology: sea urchins

(2011) D. R. McClay   DEVELOPMENT

The normal development of Platynereis dumerilii (Nereididae, Annelida)

(2011) Antje HL Fischer et al.   Frontiers in Zoology

Expression of Wnt9, TCTP, and Bmp1/Tll in sea cucumber visceral regeneration

(2011) Vladimir S. Mashanov et al.   GENE EXPRESSION PATTERNS

Synuclein accumulation is associated with cell-specific neuronal death after spinal cord injury

(2011) David J. Busch et al.   JOURNAL OF COMPARATIVE NEUROLOGY

Membrane trafficking events underlying axon repair, growth, and regeneration

(2011) Ona E. Bloom et al.   MOLECULAR AND CELLULAR NEUROSCIENCE

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Hyperspectral imaging of cuttlefish camouflage indicates good color match in the eyes of fish predators

(2011) C.-C. Chiao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

What sponges can tell us about the evolution of developmental processes

(2011) Maja Adamska et al.   ZOOLOGY

Cytoscape 2.8: new features for data integration and network visualization

(2010) M. E. Smoot et al.   BIOINFORMATICS

Development of the larval muscle system in the mussel Mytilus trossulus (Mollusca, Bivalvia)

(2010) Vyacheslav Dyachuk et al.   DEVELOPMENT GROWTH & DIFFERENTIATION

Early embryonic development of the priapulid worm Priapulus caudatus

(2010) Sofia A. Wennberg et al.   EVOLUTION & DEVELOPMENT

Structure and expression of conserved Wnt pathway components in the demosponge Amphimedon queenslandica

(2010) Maja Adamska et al.   EVOLUTION & DEVELOPMENT

Embryonic and post-embryonic development of the polyclad flatworm Maritigrella crozieri; implications for the evolution of spiralian life history traits

(2010) Kate A Rawlinson   Frontiers in Zoology

Applications of next generation sequencing in molecular ecology of non-model organisms

(2010) R Ekblom et al.   HEREDITY

Cell Lineage and Fate Map of the Primary Somatoblast of the Polychaete Annelid Capitella teleta

(2010) Néva P. Meyer et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

The genetics of ageing: insight from genome-wide approaches in invertebrate model organisms

(2010) B. K. Kennedy   JOURNAL OF INTERNAL MEDICINE

RNA sequencing: advances, challenges and opportunities

(2010) Fatih Ozsolak et al.   NATURE REVIEWS GENETICS

Hedgehog Signaling Regulates Segment Formation in the Annelid Platynereis

(2010) N. Dray et al.   SCIENCE

Clytia hemisphaerica: a jellyfish cousin joins the laboratory

(2010) Evelyn Houliston et al.   TRENDS IN GENETICS

The Homoscleromorph spongeOscarellalobularis, a promising sponge model in evolutionary and developmental biology

(2009) Alexander V. Ereskovsky et al.   BIOESSAYS

Hydra and the evolution of stem cells

(2009) Thomas C. G. Bosch   BIOESSAYS

Coordinated spatial and temporal expression of Hox genes during embryogenesis in the acoel Convolutriloba longifissura

(2009) Andreas Hejnol et al.   BMC BIOLOGY

Generation and analysis of transcriptomic resources for a model system on the rise: the sea anemone Aiptasia pallida and its dinoflagellate endosymbiont

(2009) Shinichi Sunagawa et al.   BMC GENOMICS

Neurogenesis in an annelid: Characterization of brain neural precursors in the polychaete Capitella sp. I

(2009) Néva P. Meyer et al.   DEVELOPMENTAL BIOLOGY

A Developmental Perspective: Changes in the Position of the Blastopore during Bilaterian Evolution

(2009) Mark Q. Martindale et al.   DEVELOPMENTAL CELL

Marine invertebrates as models for aging research

(2009) A.G. Bodnar   EXPERIMENTAL GERONTOLOGY

Integrated taxonomy: traditional approach and DNA barcoding for the identification of filarioid worms and related parasites (Nematoda)

(2009) Emanuele Ferri et al.   Frontiers in Zoology

Comparative Anatomy and Histology of Developmental and Parasitic Stages in the Life Cycle of the Lined Sea Anemone Edwardsiella lineata

(2009) Adam M. Reitzel et al.   JOURNAL OF PARASITOLOGY

Cell Lineage of the Ilyanassa Embryo: Evolutionary Acceleration of Regional Differentiation during Early Development

(2009) Morgan Q. Goulding   PLoS One

On the Origin of The Nervous System

(2009) Greg Miller   SCIENCE

Regeneration: The origin of cancer or a possible cure?

(2009) Néstor J. Oviedo et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Ultrastructure of mesoderm formation and development in Membranipora membranacea (Bryozoa: Gymnolaemata)

(2009) Alexander Gruhl   ZOOMORPHOLOGY

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

The transcription factor NF-κB in the demosponge Amphimedon queenslandica: insights on the evolutionary origin of the Rel homology domain

(2008) Marie Gauthier et al.   DEVELOPMENT GENES AND EVOLUTION

Embryonic development and metamorphosis of the scyphozoan Aurelia

(2008) David Yuan et al.   DEVELOPMENT GENES AND EVOLUTION

Ahedgehog homolog is involved in muscle formation and organization ofSepia officinalis (mollusca) mantle

(2008) Annalisa Grimaldi et al.   DEVELOPMENTAL DYNAMICS

Radical modification of the A-P axis and the evolution of asexual reproduction inConvolutrilobaacoels

(2008) James M. Sikes et al.   EVOLUTION & DEVELOPMENT

Myogenesis in the basal bilaterian Symsagittifera roscoffensis (Acoela)

(2008) Henrike Semmler et al.   Frontiers in Zoology

Mechanisms and behavioural functions of structural coloration in cephalopods

(2008) L. M Mathger et al.   Journal of the Royal Society Interface

Nodal signalling is involved in left–right asymmetry in snails

(2008) Cristina Grande et al.   NATURE

Acoel development indicates the independent evolution of the bilaterian mouth and anus

(2008) Andreas Hejnol et al.   NATURE

Broad phylogenomic sampling improves resolution of the animal tree of life

(2008) Casey W. Dunn et al.   NATURE

Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution

(2008) Brian T. Wilhelm et al.   NATURE

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

Embryology of a planktonic tunicate reveals traces of sessility

(2008) T. Stach et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phylogenomic analyses of lophophorates (brachiopods, phoronids and bryozoans) confirm the Lophotrochozoa concept

(2008) M. Helmkampf et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A Global View of Gene Activity and Alternative Splicing by Deep Sequencing of the Human Transcriptome

(2008) M. Sultan et al.   SCIENCE

MAPK activation and the specification of the D quadrant in the gastropod mollusc, Crepidula fornicata

(2007) Jonathan J. Henry et al.   DEVELOPMENTAL BIOLOGY