Article
Biochemistry & Molecular Biology
Maria Papadaki, Elisavet Kaitetzidou, Ioannis E. Papadakis, Dimitris G. Sfakianakis, Nikos Papandroulakis, Constantinos C. Mylonas, Elena Sarropoulou
Summary: Temperature changes can affect the activity, function, and well-being of teleosts. This study investigated the early larval development of European sea bass at different temperatures and found temperature-specific miRNA expression that targeted genes involved in reproduction and immune response. The study also observed temperature-specific effects on growth, sex, vision, and skeletal deformities.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2022)
Review
Fisheries
S. Picchietti, A. Miccoli, A. M. Fausto
Summary: This review summarizes and discusses the trends and findings in scientific literature on the gut mucosa immune role in European sea bass, providing an updated overview on the gastrointestinal tract functional regionalization and defence barriers. The review also covers immune cells in two immunologically-relevant intestinal compartments, mucosal immunoglobulins, gut microbiota, dietary manipulation impacts, and oral vaccination strategies for sea bass vaccine delivery.
FISH & SHELLFISH IMMUNOLOGY
(2021)
Article
Environmental Sciences
Stefanie Reinold, Alicia Herrera, Francesco Saliu, Carlos Hernandez-Gonzalez, Ico Martinez, Marina Lasagni, May Gomez
Summary: The presence of microplastics in seafood, particularly in farmed fish, is a concerning issue as it poses potential risks to human health. A study conducted in Tenerife, Spain found that 65% of the examined fish cultivated in coastal waters contained microplastics in their gastrointestinal tracts. Fibres and fragments were the predominant shapes of microplastics detected, with varying compositions.
MARINE POLLUTION BULLETIN
(2021)
Article
Physiology
Jack Falcon, Maria Jesus Herrero, Laura Gabriela Nisembaum, Esther Isorna, Elodie Peyric, Marilyn Beauchaud, Joel Attia, Denis Coves, Michael Fuentes, Maria Jesus Delgado, Laurence Besseau
Summary: The hormone melatonin plays a crucial role in regulating pituitary hormone production in European sea bass, influenced by factors like photoperiod, temperature, and salinity. Seasonal variations in mRNA abundance of pituitary hormones and melatonin receptors were observed in different fish groups raised in sea water and brackish water. In vitro experiments showed that melatonin's effects on pituitary hormones varied based on concentration, month investigated, and fish's prior adaptation to different salinities, highlighting the diverse responses of the pituitary gland in fish facing changing environmental conditions.
FRONTIERS IN PHYSIOLOGY
(2021)
Article
Immunology
Ines A. Ferreira, Diogo Peixoto, Ana Paula Losada, Maria Isabel Quiroga, Ana do Vale, Benjamin Costas
Summary: This study aimed to understand the early innate immune response of European sea bass to T. maritimum infection. The results showed that T. maritimum induced a local immune response in the skin, gills, and posterior-intestine of the fish. This may be due to the bacteria's ability to adhere, colonize, and damage these organs. The infected fish also exhibited systemic responses, including increased neutrophils, signs of anemia, and decreased bactericidal and lysozyme activities in the plasma.
FRONTIERS IN IMMUNOLOGY
(2023)
Article
Fisheries
Ana Patricia Mateus, Rita A. Costa, Bastien Sadoul, Marie-Laure Begout, Xavier Cousin, Adelino VM. Canario, Deborah M. Power
Summary: Fish skin is a versatile tissue influenced by epigenetic marks during embryonic development. This study examined the effects of egg incubation temperature on the regeneration of skin wounds in juvenile European sea bass. Results showed that fish from eggs incubated at higher temperatures immediately up-regulated the expression of pcna gene after skin damage, while fish from eggs incubated at lower temperatures up-regulated the expression of krt2 gene one day after damage. Regenerated epidermis was thinner in fish from eggs incubated at lower temperatures, with fewer goblet cells and melanomacrophages. Overall, thermal imprinting of eggs altered the damage-repair response in juvenile sea bass skin.
FISH & SHELLFISH IMMUNOLOGY
(2023)
Article
Fisheries
Simona Tarricone, Anna Caputi Jambrenghi, Prospero Cagnetta, Marco Ragni
Summary: Sea bass reared in an intensive system have higher lipid content and polyunsaturated fatty acids compared to wild sea bass, making them a healthy alternative for consumption.
Article
Fisheries
Cheng Zhou, Zhi-qiang Zhang, Lei Zhang, Ying Liu, Peng-fei Liu
Summary: The European sea bass showed the best growth and feeding performance at a temperature of 20 degrees C, indicating that temperature plays a significant role in promoting the growth and metabolism of this aquaculture species. Metabolomic analysis revealed important differential metabolites and metabolic pathways related to different temperature conditions, providing insights for improving production in industrial recirculating aquaculture systems.
Article
Environmental Sciences
Cassandre Aimon, Christophe Lebigre, Nicolas Le Bayon, Stephane Le Floch, Guy Claireaux
Summary: This study demonstrates that juvenile sea bass exposed to oil spills exhibit transient behavioral impairments, with a dose-response relationship observed. Recovery capacities were seen within the first 10 days post-exposure, although fish may require more time for full recovery. The alterations in behavior may be attributed to neurosensory or physiological defects caused by oil exposure, leading to sedative behaviors resembling anesthesia.
ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY
(2021)
Article
Environmental Sciences
Kilian Toledo-Guedes, Alberto Bnto, Carlos Garcia de Leaniz
Summary: This study examined the phenotypic changes and divergence of escaped sea bass from farmed conspecifics. The study found that most escapees had sizes overlapping with farmed fish, but some grew larger in the wild. Feral sea bass tended to converge towards a similar body shape, possibly due to initial starvation, phenotypic plasticity, and selection against maladapted phenotypes.
FRONTIERS IN MARINE SCIENCE
(2021)
Article
Biochemistry & Molecular Biology
Andrea Miccoli, Laura Guerra, Valeria Pianese, Paolo Roberto Saraceni, Francesco Buonocore, Anna Rita Taddei, Ana Couto, Tania De Wolf, Anna Maria Fausto, Giuseppe Scapigliati, Simona Picchietti
Summary: Our study on European sea bass reveals that TRγ cells develop earlier than TRβ cells, with the thymus showing the highest expression of TRγ. TRγ cells are mainly distributed in peripheral blood and lymphoid organs, with abundant expression in gut mucosa. Microalgae-based diet can significantly modulate the abundance of TRγ cells in the posterior intestine, potentially involved in nutritional immunity.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2021)
Article
Fisheries
Laura Sempere, Soledad Ibanez, Conrado Marin, Gregorio Moles, Sara Puchol, Jesus Rosel, Jaume Perez-Sanchez, Alicia Felip
Summary: This study compares the growth performance and reproductive physiology of 2-year-old female sea bass with early or late onset puberty. The study provides valuable information on the factors associated with early onset puberty in this species.
AQUACULTURE REPORTS
(2023)
Article
Environmental Sciences
Daniel Montero, Simona Rimoldi, Silvia Torrecillas, Jorge Rapp, Federico Moroni, Alicia Herrera, May Gomez, Alvaro Fernandez-Montero, Genciana Terova
Summary: Plastic pollution is a global issue affecting marine ecosystems, with microplastics posing a threat to marine organisms. This study revealed that ingestion of microplastics and pollutants by marine fish led to inflammatory responses in the intestine and alterations in gut microbiota, indicating potential risks for marine fish.
SCIENCE OF THE TOTAL ENVIRONMENT
(2022)
Article
Agriculture, Dairy & Animal Science
Charles Rodde, Hugues de Verdal, Marc Vandeputte, Francois Allal, Julie Nati, Mathieu Besson, Felipe R. Blasco, John A. H. Benzie, David J. McKenzie
Summary: The study investigated the prediction of individual FE in European sea bass, identifying significant effects of temperature and population on FE and RMR. However, individual FE and RMR were not significantly correlated, indicating a need for further investigation into the relationship between metabolic rate and feed efficiency.
JOURNAL OF ANIMAL SCIENCE
(2021)
Article
Food Science & Technology
Michela Pellegrini, Lucilla Iacumin, Jelka Pleadin, Greta Kresic, Elisabetta Orecchia, Andrea Colautti, Ana Vulic, Nina Kudumija, Cristian Bernardi, Giuseppe Comi
Summary: The aim of this study was to investigate the microbial and physico-chemical characteristics of cold smoked sea bass (CSSB), a novel italian fish product. The results showed the presence of bacterial contamination from raw materials, the environment, and the production process. High levels of lactic acid bacteria (LAB) and total bacteria count (TBC) were observed during storage, but did not significantly affect the total volatile basic nitrogen (TVB-N). Pathogenic bacteria were not detected. Cold smoked sea bass offers high nutritional value and excellent microbial quality, making it a beneficial food source.
Article
Marine & Freshwater Biology
Dimitris Tsaparis, Ioannis Konstantinidis, Anja Palandacic, Eleni Kalogianni, Maria Th Stoumboudi, Roberta Barbieri, Leonidas Vardakas, Nicholas Koutsikos, Costas S. Tsigenopoulos
Summary: The freshwater ichthyofauna of Greece is characterized by high diversity and endemism, facing various conservation challenges. The first comprehensive DNA barcoding survey of the genus Pelasgus revealed new information on the distribution and evolution of these fish species, identifying hotspots for further taxonomic investigations and conservation actions.
Article
Biotechnology & Applied Microbiology
C. Penaloza, T. Manousaki, R. Franch, A. Tsakogiannis, A. K. Sonesson, M. L. Aslam, F. Allal, L. Bargelloni, R. D. Houston, C. S. Tsigenopoulos
Summary: SNP arrays are powerful tools for studying the genetic basis of complex traits in European seabass and gilthead seabream, showing high conversion rates and repeatability. These arrays enable efficient genotyping and exploration of population structure and haplotype sharing in diverse fish populations.
Article
Multidisciplinary Sciences
Dariusz Czernecki, Frederic Bonhomme, Pierre-Alexandre Kaminski, Marc Delarue
Summary: Cyanophage S-2L incorporates 2-aminoadenine into its DNA, altering its biophysical properties. Through investigation of the genes and synthesis pathways involved, the researchers successfully incorporated 2-aminoadenine into the bacterial genome, opening up possibilities for studying synthetic organisms containing ZTGC-DNA.
NATURE COMMUNICATIONS
(2021)
Review
Biology
Haris Zafeiropoulos, Anastasia Gioti, Stelios Ninidakis, Antonis Potirakis, Savvas Paragkamian, Nelina Angelova, Aglaia Antoniou, Theodoros Danis, Eliza Kaitetzidou, Panagiotis Kasapidis, Jon Bent Kristoffersen, Vasileios Papadogiannis, Christina Pavloudi, Quoc Viet Ha, Jacques Lagnel, Nikos Pattakos, Giorgos Perantinos, Dimitris Sidirokastritis, Panagiotis Vavilis, Georgios Kotoulas, Tereza Manousaki, Elena Sarropoulou, Costas S. Tsigenopoulos, Christos Arvanitidis, Antonios Magoulas, Evangelos Pafilis
Summary: This article introduces a Tier 2 HPC facility at the Hellenic Centre for Marine Research, which has been running for over a decade. The facility aims to balance the depth of high-memory nodes with the breadth of slimmer nodes to meet the computational needs of various marine research fields. Analysis of hardware and software architectures, usage statistics, policy, and user management aspects have led to lessons learned that will guide future directions of the facility.
Article
Fisheries
Maria Papapetrou, Zoi Kazlari, Kantham Papanna, Leonidas Papaharisis, Stavroula Oikonomou, Tereza Manousaki, Dimitrios Loukovitis, Lefteris Kottaras, Arkadios Dimitroglou, Evgenia Gourzioti, Charalampos Pagonis, Andreas Kostandis, Costas S. Tsigenopoulos, Dimitrios Chatziplis
Summary: The European seabass is a major commercial fish in Mediterranean aquaculture, but its production is negatively affected by outbreaks of parasitic, bacterial, and viral diseases. Genetic improvement for disease resistance is an important strategy for controlling infectious diseases in farmed fish. Research into genetic variations for resistance to gill parasites through cohabitation trials provides promising results for potential genetic improvement and further analysis using molecular markers.
AQUACULTURE REPORTS
(2021)
Article
Fisheries
Francois Bonhomme, Laura Meyer, Christine Arbiol, Daniela Banaru, Lilia Bahri-Sfar, Karima Fadhlaoui-Zid, Petr Strelkov, Marco Arculeo, Laurent Soulier, Jean-Pierre Quignard, Pierre-Alexandre Gagnaire
Summary: The study reveals that coastal anchovies in the Mediterranean share a common ancestor, despite limited gene flow, there is still significant genetic differentiation. Therefore, it is proposed that coastal anchovies should have their own species status and emphasize the need for a unified taxonomical framework for future research and management.
JOURNAL OF FISH BIOLOGY
(2022)
Article
Agriculture, Dairy & Animal Science
Stavroula Oikonomou, Athanasios Samaras, Maria Tekeoglou, Dimitrios Loukovitis, Arkadios Dimitroglou, Lefteris Kottaras, Kantham Papanna, Leonidas Papaharisis, Costas S. Tsigenopoulos, Michail Pavlidis, Dimitrios Chatziplis
Summary: This study investigates the genetic structure of stress response, body weight, and disease resistance in European seabass. The findings identify genomic regions affecting these traits and estimate their heritability. These results have important implications for genetic improvement in aquaculture breeding programs.
Article
Biodiversity Conservation
Catalina A. Garcia-Escudero, Costas S. Tsigenopoulos, Vasilis Gerakaris, Alexandros Tsakogiannis, Eugenia T. Apostolaki
Summary: Non-indigenous species pose a major threat to the native marine ecosystems of the Mediterranean Sea. A reassessment of a reported exotic seagrass species in Salamina Island, Greece, using DNA barcoding revealed that it is likely a morphologically variant of Halophila stipulacea. This study highlights the importance of applying an integrated taxonomic approach to effectively monitor the introductions of non-indigenous species.
Article
Biochemistry & Molecular Biology
Luke K. McKenzie, Marie Flamme, Patrick S. Felder, Johannes Karges, Frederic Bonhomme, Albert Gandioso, Christian Malosse, Gilles Gasser, Marcel Hollenstein
Summary: Ruthenium complexes and aptamers can be used as photosensitizers in photodynamic therapy, but their lack of inherent targeting to disease sites may lead to side effects and the need for higher doses. This study presents the first direct conjugation of a Ru(ii) polypyridyl complex-based photosensitizer to an aptamer, and evaluates its in vitro cancer cell specific photosensitization.
RSC CHEMICAL BIOLOGY
(2022)
Article
Multidisciplinary Sciences
O. Nousias, S. Oikonomou, T. Manousaki, V Papadogiannis, N. Angelova, D. Tsaparis, A. Tsakogiannis, N. Duncan, A. Estevez, K. Tzokas, M. Pavlidis, D. Chatziplis, C. S. Tsigenopoulos
Summary: This study constructed a high-density genetic map of meagre using ddRAD sequencing and provided genomic appreciation for weight traits. Comparative genomics analysis with other teleost species revealed the evolutionary history of meagre's genome and highlighted its potential as a valuable resource for research and production.
SCIENTIFIC REPORTS
(2022)
Article
Genetics & Heredity
Sergio Vela-Avitua, Ingunn Thorland, Vasileios Bakopoulos, Kantham Papanna, Arkadios Dimitroglou, Eleftherios Kottaras, Papaharisis Leonidas, Bruno Guinand, Costas S. Tsigenopoulos, Muhammad L. Aslam
Summary: Viral nervous necrosis (VNN) is an infectious disease caused by the red-spotted grouper nervous necrosis virus (RGNNV) in European sea bass. A genome-wide association analysis revealed a strong signal of quantitative trait loci (QTL) at LG12, which explained around 33% of the genetic variance. The genes HSPA4L and/or REEP1 were found to be highly relevant in managing disease-associated symptoms.
FRONTIERS IN GENETICS
(2022)
Article
Agriculture, Dairy & Animal Science
Dimitrios Tsaparis, Thomas Lecocq, Dimitrios Kyriakis, Katerina Oikonomaki, Pascal Fontaine, Costas S. Tsigenopoulos
Summary: The genetic background of pikeperch populations was assessed using genetic markers, revealing that current broodstocks have similar genetic diversity to wild populations. Genetic differentiation analysis showed that European pikeperch populations can be divided into two groups, with one predominantly found in Northern Europe and around the Baltic Sea, and the other primarily in Central Europe. Aquaculture broodstocks were found to have fish of a single origin with a few exceptions. The study provides valuable information on the genetic diversity of pikeperch and offers a genetic tool for fish stock management and improvement.
Article
Fisheries
Beatriz Villanueva, Almudena Fernandez, Ramon Peiro-Pastor, Carolina Penaloza, Ross D. Houston, Anna K. Sonesson, Costas S. Tsigenopoulos, Luca Bargelloni, Kutsal Gamsiz, Bilge Karahan, Emel O. Gokcek, Jesus Fernandez, Maria Saura
Summary: Population structure and genetic diversity between wild and farmed populations of gilthead sea bream and European seabass in the Mediterranean Sea were assessed in this study. Results showed clear differentiation between wild and farmed populations, with farmed populations showing high heterogeneity. Some farmed populations had a genetic makeup similar to wild populations. Effective population sizes were larger in wild populations and smaller in farmed populations.
AQUACULTURE REPORTS
(2022)
Article
Biology
Nelina Angelova, Theodoros Danis, Jacques Lagnel, Costas S. Tsigenopoulos, Tereza Manousaki
Summary: This study presents SnakeCube, an automated and containerized whole de novo genome assembly pipeline that runs within isolated, secured environments and is suitable for use in High Performance Computing (HPC) domains. It has been optimized for performance and tested for effectiveness with various inputs, highlighting its universal applicability in the field.
BMC RESEARCH NOTES
(2022)
Article
Fisheries
Orestis Nousias, Konstantinos Tzokas, Leonidas Papaharisis, Katerina Ekonomaki, Dimitrios Chatziplis, Costas Batargias, Costas S. Tsigenopoulos
Summary: This study evaluated the genetic diversity of various meagre broodstocks in Greece using microsatellite analysis. By analyzing relatedness and genetic data, the study provided an effective method and guidance for selecting breeder candidates in aquaculture.