Use of continuous, real-time observations and model simulations to achieve autonomous, adaptive sampling of microbial processes with a robotic sampler

Distributions of invertebrate larvae and phytoplankton in a coastal upwelling system retention zone and peripheral front

(2014) J.P. Ryan et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Boundary influences on HAB phytoplankton ecology in a stratification-enhanced upwelling shadow

(2013) J.P. Ryan et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

Autonomous Application of Quantitative PCR in the Deep Sea: In Situ Surveys of Aerobic Methanotrophs Using the Deep-Sea Environmental Sample Processor

(2013) William Ussler et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Characterizing Microbial Community and Geochemical Dynamics at Hydrothermal Vents Using Osmotically Driven Continuous Fluid Samplers

(2013) Julie Robidart et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Dark Carbon Fixation in the Columbia River’s Estuarine Turbidity Maxima: Molecular Characterization of Red-Type cbbL Genes and Measurement of DIC Uptake Rates in Response to Added Electron Donors

(2013) S. L. Bräuer et al.   Estuaries and Coasts

Nutrient Loading and Transformations in the Columbia River Estuary Determined by High-Resolution In Situ Sensors

(2013) Melissa Gilbert et al.   Estuaries and Coasts

Contrasting genomic properties of free-living and particle-attached microbial assemblages within a coastal ecosystem

(2013) Maria W. Smith et al.   Frontiers in Microbiology

Associations between Mesodinium rubrum and cryptophyte algae in the Columbia River estuary

(2012) TD Peterson et al.   AQUATIC MICROBIAL ECOLOGY

Red Waters of Myrionecta rubra are Biogeochemical Hotspots for the Columbia River Estuary with Impacts on Primary/Secondary Productions and Nutrient Cycles

(2012) Lydie Herfort et al.   Estuaries and Coasts

An Online Utility-Based Approach for Sampling Dynamic Ocean Fields

(2012) A. Garcia-Olaya et al.   IEEE JOURNAL OF OCEANIC ENGINEERING

Autonomous detection and sampling of water types and fronts in a coastal upwelling system by an autonomous underwater vehicle

(2012) Yanwu Zhang et al.   LIMNOLOGY AND OCEANOGRAPHY-METHODS

Metatranscriptomic analysis of autonomously collected and preserved marine bacterioplankton

(2011) Elizabeth A Ottesen et al.   ISME Journal

Harmful phytoplankton ecology studies using an autonomous molecular analytical and ocean observing network

(2011) J. Ryan et al.   LIMNOLOGY AND OCEANOGRAPHY

The Land/Ocean Biogeochemical Observatory: A robust networked mooring system for continuously monitoring complex biogeochemical cycles in estuaries

(2011) Hans W. Jannasch et al.   LIMNOLOGY AND OCEANOGRAPHY-METHODS

Protist 18S rRNA gene sequence analysis reveals multiple sources of organic matter contributing to turbidity maxima of the Columbia River estuary

(2011) L Herfort et al.   MARINE ECOLOGY PROGRESS SERIES

Underwater Application of Quantitative PCR on an Ocean Mooring

(2011) Christina M. Preston et al.   PLoS One

Myrionecta rubra population genetic diversity and its cryptophyte chloroplast specificity in recurrent red tides in the Columbia River estuary

(2010) L Herfort et al.   AQUATIC MICROBIAL ECOLOGY

Culturable Rhodobacter and Shewanella species are abundant in estuarine turbidity maxima of the Columbia River

(2010) S. L. Bräuer et al.   ENVIRONMENTAL MICROBIOLOGY

Design and Tests of an Adaptive Triggering Method for Capturing Peak Samples in a Thin Phytoplankton Layer by an Autonomous Underwater Vehicle

(2010) Yanwu Zhang et al.   IEEE JOURNAL OF OCEANIC ENGINEERING

Seasonal Changes in Bacterial and Archaeal Gene Expression Patterns across Salinity Gradients in the Columbia River Coastal Margin

(2010) Maria W. Smith et al.   PLoS One

Near real-time, autonomous detection of marine bacterioplankton on a coastal mooring in Monterey Bay, California, using rRNA-targeted DNA probes

(2009) Christina M. Preston et al.   ENVIRONMENTAL MICROBIOLOGY

Can the black box be cracked? The augmentation of microbial ecology by high-resolution, automated sensing technologies

(2009) Ashley Shade et al.   ISME Journal

Scientific Exploration in the Era of Ocean Observatories

(2008) Ant Baptista et al.   COMPUTING IN SCIENCE & ENGINEERING

SELFE: A semi-implicit Eulerian–Lagrangian finite-element model for cross-scale ocean circulation

(2008) Yinglong Zhang et al.   OCEAN MODELLING