Factors influencing nitrification rates and the abundance and transcriptional activity of ammonia-oxidizing microorganisms in the dark northeast Pacific Ocean

Depth distribution of ammonia oxidation rates and ammonia-oxidizer community composition in the Sargasso Sea

(2016) Silvia E. Newell et al.   LIMNOLOGY AND OCEANOGRAPHY

Cyanobacterial distributions along a physico-chemical gradient in the Northeastern Pacific Ocean

(2015) Sebastian Sudek et al.   ENVIRONMENTAL MICROBIOLOGY

Size-fraction partitioning of community gene transcription and nitrogen metabolism in a marine oxygen minimum zone

(2015) Sangita Ganesh et al.   ISME Journal

Genomic and proteomic characterization of “CandidatusNitrosopelagicus brevis”: An ammonia-oxidizing archaeon from the open ocean

(2015) Alyson E. Santoro et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microbial community transcriptional networks are conserved in three domains at ocean basin scales

(2015) Frank O. Aylward et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Differential contributions of archaeal ammonia oxidizer ecotypes to nitrification in coastal surface waters

(2014) Jason M Smith et al.   ISME Journal

Spatiotemporal Relationships Between the Abundance, Distribution, and Potential Activities of Ammonia-Oxidizing and Denitrifying Microorganisms in Intertidal Sediments

(2014) Jason M. Smith et al.   MICROBIAL ECOLOGY

Genomic and Metabolic Diversity of Marine Group I Thaumarchaeota in the Mesopelagic of Two Subtropical Gyres

(2014) Brandon K. Swan et al.   PLoS One

Ammonium Uptake by Phytoplankton Regulates Nitrification in the Sunlit Ocean

(2014) Jason M. Smith et al.   PLoS One

Transcriptional Response of the Archaeal Ammonia Oxidizer Nitrosopumilus maritimus to Low and Environmentally Relevant Ammonia Concentrations

(2013) Tatsunori Nakagawa et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A role for nitrite in the production of nitrous oxide in the lower euphotic zone of the oligotrophic North Pacific Ocean

(2013) Samuel T. Wilson et al.   DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS

Large-scale alignment of oceanic nitrate and density

(2013) Melissa M. Omand et al.   JOURNAL OF GEOPHYSICAL RESEARCH-OCEANS

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

ArchaealamoA gene diversity points to distinct biogeography of ammonia-oxidizingCrenarchaeotain the ocean

(2012) Eva Sintes et al.   ENVIRONMENTAL MICROBIOLOGY

Diversity, abundance and expression of nitrite reductase (nirK)-like genes in marine thaumarchaea

(2012) Marie B Lund et al.   ISME Journal

Genome-enabled transcriptomics reveals archaeal populations that drive nitrification in a deep-sea hydrothermal plume

(2012) Brett J Baker et al.   ISME Journal

Quantification of ammonia oxidation rates and ammonia-oxidizing archaea and bacteria at high resolution in the Gulf of California and eastern tropical North Pacific Ocean

(2012) J. Michael Beman et al.   LIMNOLOGY AND OCEANOGRAPHY

Global oceanic production of nitrous oxide

(2012) A. Freing et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Role for urea in nitrification by polar marine Archaea

(2012) L. Alonso-Saez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ammonia oxidation rates and nitrification in the Arabian Sea

(2011) Silvia E. Newell et al.   GLOBAL BIOGEOCHEMICAL CYCLES

Contribution of crenarchaeal autotrophic ammonia oxidizers to the dark primary production in Tyrrhenian deep waters (Central Mediterranean Sea)

(2011) Michail M Yakimov et al.   ISME Journal

Shedding light on processes that control particle export and flux attenuation in the twilight zone of the open ocean

(2011) Ken O. Buesseler et al.   LIMNOLOGY AND OCEANOGRAPHY

Population ecology of nitrifying Archaea and Bacteria in the Southern California Bight

(2010) J. Michael Beman et al.   ENVIRONMENTAL MICROBIOLOGY

Activity, abundance and diversity of nitrifying archaea and bacteria in the central California Current

(2010) Alyson E. Santoro et al.   ENVIRONMENTAL MICROBIOLOGY

Bacterial vs. zooplankton control of sinking particle flux in the ocean's twilight zone

(2010) Deborah K. Steinberg et al.   LIMNOLOGY AND OCEANOGRAPHY

Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea

(2010) C. B. Walker et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comparative Metagenomic Analysis of a Microbial Community Residing at a Depth of 4,000 Meters at Station ALOHA in the North Pacific Subtropical Gyre

(2009) K. T. Konstantinidis et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Thorium-234 as a tracer of spatial, temporal and vertical variability in particle flux in the North Pacific

(2009) K.O. Buesseler et al.   DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS

Abundances of crenarchaealamoAgenes and transcripts in the Pacific Ocean

(2009) Matthew J. Church et al.   ENVIRONMENTAL MICROBIOLOGY

Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data

(2009) Micah Hamady et al.   ISME Journal

Ammonia oxidation kinetics determine niche separation of nitrifying Archaea and Bacteria

(2009) Willm Martens-Habbena et al.   NATURE

The radiocarbon signature of microorganisms in the mesopelagic ocean

(2009) R. L. Hansman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Revising the nitrogen cycle in the Peruvian oxygen minimum zone

(2009) P. Lam et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Particle fluxes associated with mesoscale eddies in the Sargasso Sea

(2008) K.O. Buesseler et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

VERTIGO (VERtical Transport In the Global Ocean): A study of particle sources and flux attenuation in the North Pacific

(2008) K.O. Buesseler et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

Molecular and biogeochemical evidence for ammonia oxidation by marine Crenarchaeota in the Gulf of California

(2008) J Michael Beman et al.   ISME Journal