A Network-Based Kernel Machine Test for the Identification of Risk Pathways in Genome-Wide Association Studies

Pathway-based analysis of primary biliary cirrhosis genome-wide association studies

(2013) S P Kar et al.   GENES AND IMMUNITY

A Novel Kernel for Correcting Size Bias in the Logistic Kernel Machine Test with an Application to Rheumatoid Arthritis

(2013) Saskia Freytag et al.   HUMAN HEREDITY

Network models of genome-wide association studies uncover the topological centrality of protein interactions in complex diseases

(2013) Younghee Lee et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

Pathway Analysis Using Information from Allele-Specific Gene Methylation in Genome-Wide Association Studies for Bipolar Disorder

(2013) Li-Chung Chuang et al.   PLoS One

Multi-SNP Analysis of GWAS Data Identifies Pathways Associated with Nonalcoholic Fatty Liver Disease

(2013) Qing-Rong Chen et al.   PLoS One

Robustness of Bayesian Multilocus Association Models to Cryptic Relatedness

(2012) Hanni P. Kärkkäinen et al.   ANNALS OF HUMAN GENETICS

Notch signalling pathways mediate synovial angiogenesis in response to vascular endothelial growth factor and angiopoietin 2

(2012) Wei Gao et al.   ANNALS OF THE RHEUMATIC DISEASES

rBiopaxParser—an R package to parse, modify and visualize BioPAX data

(2012) Frank Kramer et al.   BIOINFORMATICS

Genome-wide pathway analysis of a genome-wide association study on multiple sclerosis

(2012) Gwan Gyu Song et al.   MOLECULAR BIOLOGY REPORTS

Leveraging models of cell regulation and GWAS data in integrative network-based association studies

(2012) Andrea Califano et al.   NATURE GENETICS

The mystery of missing heritability: Genetic interactions create phantom heritability

(2012) O. Zuk et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ten Years of Pathway Analysis: Current Approaches and Outstanding Challenges

(2012) Purvesh Khatri et al.   PLoS Computational Biology

HAPGEN2: simulation of multiple disease SNPs

(2011) Zhan Su et al.   BIOINFORMATICS

Using the gene ontology to scan multilevel gene sets for associations in genome wide association studies

(2011) Daniel J. Schaid et al.   GENETIC EPIDEMIOLOGY

The Integration of Biological Pathway Knowledge in Cancer Genomics: A review of existing computational approaches

(2011) Vinay Varadan et al.   IEEE SIGNAL PROCESSING MAGAZINE

Incorporating Biological Pathways via a Markov Random Field Model in Genome-Wide Association Studies

(2011) Min Chen et al.   PLoS Genetics

Powerful SNP-Set Analysis for Case-Control Genome-wide Association Studies

(2010) Michael C. Wu et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Recent advances in the genetics of rheumatoid arthritis

(2010) Soumya Raychaudhuri   CURRENT OPINION IN RHEUMATOLOGY

Genomic Similarity and Kernel Methods II: Methods for Genomic Information

(2010) Daniel J. Schaid   HUMAN HEREDITY

Analysing biological pathways in genome-wide association studies

(2010) Kai Wang et al.   NATURE REVIEWS GENETICS

A Unified Approach to Genotype Imputation and Haplotype-Phase Inference for Large Data Sets of Trios and Unrelated Individuals

(2009) Brian L. Browning et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Molecular networks as sensors and drivers of common human diseases

(2009) Eric E. Schadt   NATURE

Kernel methods in machine learning

(2008) Thomas Hofmann et al.   ANNALS OF STATISTICS

Estimation and testing for the effect of a genetic pathway on a disease outcome using logistic kernel machine regression via logistic mixed models

(2008) Dawei Liu et al.   BMC BIOINFORMATICS

Matrix Metalloproteinase 1 (MMP1) Is Associated with Early-Onset Lung Cancer

(2008) W. Sauter et al.   CANCER EPIDEMIOLOGY BIOMARKERS & PREVENTION

Network-based model weighting to detect multiple loci influencing complex diseases

(2008) Wei Pan   HUMAN GENETICS

Getting Started in Biological Pathway Construction and Analysis

(2008) Ganesh A Viswanathan et al.   PLoS Computational Biology