Comparison of strand-specific transcriptomes of enterohemorrhagic Escherichia coli O157:H7 EDL933 (EHEC) under eleven different environmental conditions including radish sprouts and cattle feces

Incidence of naturally internalized bacteria in lettuce leaves

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Transcriptional Responses of Escherichia coli K-12 and O157:H7 Associated with Lettuce Leaves

(2012) Ryan C. Fink et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Involvement of PatE, a Prophage-Encoded AraC-Like Regulator, in the Transcriptional Activation of Acid Resistance Pathways of Enterohemorrhagic Escherichia coli Strain EDL933

(2012) Jennifer K. Bender et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

How deep is deep enough for RNA-Seq profiling of bacterial transcriptomes?

(2012) Brian J Haas et al.   BMC GENOMICS

Proteins other than the locus of enterocyte effacement-encoded proteins contribute to Escherichia coli O157:H7 adherence to bovine rectoanal junction stratified squamous epithelial cells

(2012) Indira T Kudva et al.   BMC MICROBIOLOGY

Identification, Isolation and characterization of a novel azoreductase from Clostridium perfringens

(2011) Jessica M. Morrison et al.   ANAEROBE

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(2011) Anne M Augustus et al.   BMC GENOMICS

Directional RNA deep sequencing sheds new light on the transcriptional response of Anabaena sp. strain PCC 7120 to combined-nitrogen deprivation

(2011) Britt L Flaherty et al.   BMC GENOMICS

Transcriptomic Analysis for Genetic Mechanisms of the Factors Related to Biofilm Formation in Escherichia coli O157:H7

(2011) Jin-Hyung Lee et al.   CURRENT MICROBIOLOGY

Inactivation of Escherichia coli O157:H7 Attached to Spinach Harvester Blade Using Bacteriophage

(2011) Jitendra Patel et al.   Foodborne Pathogens and Disease

Bile Salts Induce Resistance to Polymyxin in Enterohemorrhagic Escherichia coliO157:H7

(2011) J. V. Kus et al.   JOURNAL OF BACTERIOLOGY

Characterisation of the Escherichia coli strain associated with an outbreak of haemolytic uraemic syndrome in Germany, 2011: a microbiological study

(2011) Martina Bielaszewska et al.   LANCET INFECTIOUS DISEASES

Identification of a novel prophage regulator in Escherichia coli controlling the expression of type III secretion

(2011) Allen F. Flockhart et al.   MOLECULAR MICROBIOLOGY

Sequencing Illustrates the Transcriptional Response of Legionella pneumophila during Infection and Identifies Seventy Novel Small Non-Coding RNAs

(2011) Barbara A. Weissenmayer et al.   PLoS One

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(2011) Michael B. Clark et al.   PLOS BIOLOGY

Transcriptome Analysis of Escherichia coli O157:H7 Exposed to Lysates of Lettuce Leaves

(2010) J. L. Kyle et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

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(2010) T. Carver et al.   BIOINFORMATICS

The pathogenic E. coli type III effector EspZ interacts with host CD98 and facilitates host cell prosurvival signalling

(2010) Stephanie R. Shames et al.   CELLULAR MICROBIOLOGY

Deep mRNA Sequencing for In Vivo Functional Analysis of Cardiac Transcriptional Regulators

(2010) Scot J. Matkovich et al.   CIRCULATION RESEARCH

Escherichia coli O157:H7: Animal Reservoir and Sources of Human Infection

(2010) Witold A. Ferens et al.   Foodborne Pathogens and Disease

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(2010) A. P. Vivancos et al.   GENOME RESEARCH

Comprehensive annotation of the transcriptome of the human fungal pathogen Candida albicans using RNA-seq

(2010) V. M. Bruno et al.   GENOME RESEARCH

Relative gene transcription and pathogenicity of enterohemorrhagic Escherichia coli after long-term adaptation to acid and salt stress

(2010) Inger Olesen et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Upregulation of MetC Is Essential for D-Alanine-Independent Growth of an alr/dadX-Deficient Escherichia coli Strain

(2010) L. Kang et al.   JOURNAL OF BACTERIOLOGY

Transcriptome Analysis of Pseudomonas syringae Identifies New Genes, Noncoding RNAs, and Antisense Activity

(2010) M. J. Filiatrault et al.   JOURNAL OF BACTERIOLOGY

Transfer of Enteric Pathogens to Successive Habitats as Part of Microbial Cycles

(2010) Alexander M. Semenov et al.   MICROBIAL ECOLOGY

Functional genomics of probiotic Escherichia coli Nissle 1917 and 83972, and UPEC strain CFT073: comparison of transcriptomes, growth and biofilm formation

(2010) Viktoria Hancock et al.   MOLECULAR GENETICS AND GENOMICS

Cartography of Methicillin-Resistant S. aureus Transcripts: Detection, Orientation and Temporal Expression during Growth Phase and Stress Conditions

(2010) Marie Beaume et al.   PLoS One

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

(2010) Jeremy Goecks et al.   GENOME BIOLOGY

Gene Expression Induced in Escherichia coli O157:H7 upon Exposure to Model Apple Juice

(2009) T. M. Bergholz et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

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(2009) H. Li et al.   BIOINFORMATICS

The MAP kinase-activated protein kinase 2 (MK2) contributes to the Shiga toxin-induced inflammatory response

(2009) Jose B. Saenz et al.   CELLULAR MICROBIOLOGY

Complex regulatory network encompassing the Csr, c-di-GMP and motility systems ofSalmonellaTyphimurium

(2009) Kristina Jonas et al.   ENVIRONMENTAL MICROBIOLOGY

Transcriptome analysis ofEscherichia coli O157:H7 EDL933 during heat shock

(2009) Michael D. Carruthers et al.   FEMS MICROBIOLOGY LETTERS

The Escherichia coli Azoreductase AzoR Is Involved in Resistance to Thiol-Specific Stress Caused by Electrophilic Quinones

(2009) G. Liu et al.   JOURNAL OF BACTERIOLOGY

Principles of c-di-GMP signalling in bacteria

(2009) Regine Hengge   NATURE REVIEWS MICROBIOLOGY

Expression profiling of hypothetical genes in Desulfovibrio vulgaris leads to improved functional annotation

(2009) Dwayne A. Elias et al.   NUCLEIC ACIDS RESEARCH

Genome-Wide Identification of Transcription Start Sites, Promoters and Transcription Factor Binding Sites in E. coli

(2009) Alfredo Mendoza-Vargas et al.   PLoS One

MetJ repressor interactions with DNA probed by in-cell NMR

(2009) A. M. Augustus et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Fate of the H-NS–Repressed bgl Operon in Evolution of Escherichia coli

(2009) T. Sabari Sankar et al.   PLoS Genetics

A Strand-Specific RNA–Seq Analysis of the Transcriptome of the Typhoid Bacillus Salmonella Typhi

(2009) Timothy T. Perkins et al.   PLoS Genetics

The Defective Prophage Pool of Escherichia coli O157: Prophage–Prophage Interactions Potentiate Horizontal Transfer of Virulence Determinants

(2009) Md Asadulghani et al.   PLoS Pathogens

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

A single channel for nitrate uptake, nitrite export and nitrite uptake byEscherichia coliNarU and a role for NirC in nitrite export and uptake

(2008) Wenjing Jia et al.   BIOCHEMICAL JOURNAL

Escherichia coli transcription factor YncC (McbR) regulates colanic acid and biofilm formation by repressing expression of periplasmic protein YbiM (McbA)

(2008) Xue-Song Zhang et al.   ISME Journal

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

An Escherichia coli asr mutant has decreased fitness during colonization in a mouse model

(2008) Julija Armalytė et al.   RESEARCH IN MICROBIOLOGY

The Emergence and Fate of Horizontally Acquired Genes in Escherichia coli

(2008) Mark W. J. van Passel et al.   PLoS Computational Biology