De novo assembly, characterization and functional annotation of Senegalese sole (Solea senegalensis) and common sole (Solea solea) transcriptomes: integration in a database and design of a microarray

Sma3s: A Three-Step Modular Annotator for Large Sequence Datasets

(2014) A. Munoz-Merida et al.   DNA RESEARCH

Whole-genome sequence of a flatfish provides insights into ZW sex chromosome evolution and adaptation to a benthic lifestyle

(2014) Songlin Chen et al.   NATURE GENETICS

Transcriptomic Analysis of Endangered Chinese Salamander: Identification of Immune, Sex and Reproduction-Related Genes and Genetic Markers

(2014) Rongbo Che et al.   PLoS One

Exploring the larval transcriptome of the common sole (Solea solea L.)

(2013) Serena Ferraresso et al.   BMC GENOMICS

A comparison across non-model animals suggests an optimal sequencing depth for de novo transcriptome assembly

(2013) Warren R Francis et al.   BMC GENOMICS

A systematic genome-wide analysis of zebrafish protein-coding gene function

(2013) Ross N. W. Kettleborough et al.   NATURE

The zebrafish reference genome sequence and its relationship to the human genome

(2013) Kerstin Howe et al.   NATURE

De novoassembly of maritime pine transcriptome: implications for forest breeding and biotechnology

(2013) Javier Canales et al.   PLANT BIOTECHNOLOGY JOURNAL

De Novo Transcriptome Sequence Assembly and Analysis of RNA Silencing Genes of Nicotiana benthamiana

(2013) Kenlee Nakasugi et al.   PLoS One

Development and Characterization of Genomic and Expressed SSRs in Citrus by Genome-Wide Analysis

(2013) Sheng-Rui Liu et al.   PLoS One

Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels

(2012) Marcel H. Schulz et al.   BIOINFORMATICS

Fast skeletal muscle transcriptome of the Gilthead sea bream (Sparus aurata) determined by next generation sequencing

(2012) Daniel Garcia de la serrana et al.   BMC GENOMICS

Advances in genomics for flatfish aquaculture

(2012) Joan Cerdà et al.   Genes and Nutrition

Incorporating RNA-seq data into the zebrafish Ensembl genebuild

(2012) J. E. Collins et al.   GENOME RESEARCH

Characterization of European Sea Bass Transcripts by RNA SEQ After Oral Vaccine Against V. anguillarum

(2012) E. Sarropoulou et al.   MARINE BIOTECHNOLOGY

Validation and comparison of microsatellite markers derived from Senegalese sole (Solea senegalensis, Kaup) genomic and expressed sequence tags libraries

(2012) M. J. MOLINA-LUZÓN et al.   Molecular Ecology Resources

Reference-free transcriptome assembly in non-model animals from next-generation sequencing data

(2012) V. CAHAIS et al.   Molecular Ecology Resources

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

High-Throughput Sequence Analysis of Turbot (Scophthalmus maximus) Transcriptome Using 454-Pyrosequencing for the Discovery of Antiviral Immune Genes

(2012) Patricia Pereiro et al.   PLoS One

EuroPineDB: a high-coverage web database for maritime pine transcriptome

(2011) Noé Fernández-Pozo et al.   BMC GENOMICS

De Novo Assembly of Chickpea Transcriptome Using Short Reads for Gene Discovery and Marker Identification

(2011) R. Garg et al.   DNA RESEARCH

Genomic characterization, phylogeny and gene regulation of g-type lysozyme in sole (Solea senegalensis)

(2011) Marian Ponce et al.   FISH & SHELLFISH IMMUNOLOGY

Analysis of three multigene families as useful tools in species characterization of two closely-related species, Dicentrarchus labrax, Dicentrarchus punctatus and their hybrids

(2011) Manuel Alejandro Merlo et al.   GENES & GENETIC SYSTEMS

Transcriptomic Characterization of the Larval Stage in Gilthead Seabream (Sparus aurata) by 454 Pyrosequencing

(2011) Manuel Yúfera et al.   MARINE BIOTECHNOLOGY

SeqTrim: a high-throughput pipeline for preprocessing any type of sequence reads

(2010) Juan Falgueras et al.   BMC BIOINFORMATICS

Immune- and stress-related transcriptomic responses of Solea senegalensis stimulated with lipopolysaccharide and copper sulphate using heterologous cDNA microarrays

(2009) Inmaculada Osuna-Jiménez et al.   FISH & SHELLFISH IMMUNOLOGY

Genomic characterization and gene expression analysis of four hepcidin genes in the redbanded seabream (Pagrus auriga)

(2009) Beatriz Martin-Antonio et al.   FISH & SHELLFISH IMMUNOLOGY

Genomic resources for a commercial flatfish, the Senegalese sole (Solea senegalensis): EST sequencing, oligo microarray design, and development of the bioinformatic platform Soleamold

(2008) Joan Cerda et al.   BMC GENOMICS

Selection of housekeeping genes for gene expression studies in larvae from flatfish using real-time PCR

(2008) Carlos Infante et al.   BMC MOLECULAR BIOLOGY

Translational Machinery of Senegalese Sole (Solea senegalensis Kaup) and Atlantic Halibut (Hippoglossus hippoglossus L.): Comparative Sequence Analysis of the Complete Set of 60S Ribosomal Proteins and their Expression

(2008) Makoto P. Matsuoka et al.   MARINE BIOTECHNOLOGY

Teleostean IL11b exhibits complementing function to IL11a and expansive involvement in antibacterial and antiviral responses

(2008) Mudjekeewis D. Santos et al.   MOLECULAR IMMUNOLOGY

Molecular characterization and gene expression of six trypsinogens in the flatfish Senegalese sole (Solea senegalensis Kaup) during larval development and in tissues

(2007) Manuel Manchado et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY B-BIOCHEMISTRY & MOLECULAR BIOLOGY

Thyroid hormones down-regulate thyrotropin β subunit and thyroglobulin during metamorphosis in the flatfish Senegalese sole (Solea senegalensis Kaup)

(2007) Manuel Manchado et al.   GENERAL AND COMPARATIVE ENDOCRINOLOGY