De Novo Transcriptome Sequence Assembly and Analysis of RNA Silencing Genes of Nicotiana benthamiana
出版年份 2013 全文链接
标题
De Novo Transcriptome Sequence Assembly and Analysis of RNA Silencing Genes of Nicotiana benthamiana
作者
关键词
-
出版物
PLoS One
Volume 8, Issue 3, Pages e59534
出版商
Public Library of Science (PLoS)
发表日期
2013-03-29
DOI
10.1371/journal.pone.0059534
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Transcriptome assembly and isoform expression level estimation from biased RNA-Seq reads
- (2012) Wei Li et al. BIOINFORMATICS
- Cutoffs and k-mers: implications from a transcriptome study in allopolyploid plants
- (2012) Nicole Gruenheit et al. BMC GENOMICS
- Deciphering the complex leaf transcriptome of the allotetraploid species Nicotiana tabacum: a phylogenomic perspective
- (2012) Aureliano Bombarely et al. BMC GENOMICS
- Optimizing de novo common wheat transcriptome assembly using short-read RNA-Seq data
- (2012) Jialei Duan et al. BMC GENOMICS
- Genome-wide identification of Dicer-like, Argonaute and RNA-dependent RNA polymerase gene families and their expression analyses in response to viral infection and abiotic stresses in Solanum lycopersicum
- (2012) Miao Bai et al. GENE
- Transcriptome survey reveals increased complexity of the alternative splicing landscape inArabidopsis
- (2012) Yamile Marquez et al. GENOME RESEARCH
- A Draft Genome Sequence of Nicotiana benthamiana to Enhance Molecular Plant-Microbe Biology Research
- (2012) Aureliano Bombarely et al. MOLECULAR PLANT-MICROBE INTERACTIONS
- Transcriptome Analysis of Nicotiana tabacum Infected by Cucumber mosaic virus during Systemic Symptom Development
- (2012) Jie Lu et al. PLoS One
- RNA-Seq Assembly – Are We There Yet?
- (2012) Simon Schliesky et al. Frontiers in Plant Science
- Comparative morphology and phylogeny of Nicotiana section Suaveolentes (Solanaceae) in Australia and the South Pacific
- (2011) Claire E. Marks et al. AUSTRALIAN SYSTEMATIC BOTANY
- Optimizing de novo transcriptome assembly from short-read RNA-Seq data: a comparative study
- (2011) Qiong-Yi Zhao et al. BMC BIOINFORMATICS
- RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
- (2011) Bo Li et al. BMC BIOINFORMATICS
- Characterization of the Conus bullatus genome and its venom-duct transcriptome
- (2011) Hao Hu et al. BMC GENOMICS
- Full-length transcriptome assembly from RNA-Seq data without a reference genome
- (2011) Manfred G Grabherr et al. NATURE BIOTECHNOLOGY
- Reorganizing the protein space at the Universal Protein Resource (UniProt)
- (2011) NUCLEIC ACIDS RESEARCH
- The Transcriptome of the Reference Potato Genome Solanum tuberosum Group Phureja Clone DM1-3 516R44
- (2011) Alicia N. Massa et al. PLoS One
- Viral suppressors of RNA silencing
- (2011) József Burgyán et al. TRENDS IN PLANT SCIENCE
- From RNA-seq reads to differential expression results
- (2011) Alicia Oshlack et al. GENOME BIOLOGY
- Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments
- (2010) James H Bullard et al. BMC BIOINFORMATICS
- Control of female gamete formation by a small RNA pathway in Arabidopsis
- (2010) Vianey Olmedo-Monfil et al. NATURE
- Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
- (2010) Cole Trapnell et al. NATURE BIOTECHNOLOGY
- De novo assembly and analysis of RNA-seq data
- (2010) Gordon Robertson et al. NATURE METHODS
- Establishing, maintaining and modifying DNA methylation patterns in plants and animals
- (2010) Julie A. Law et al. NATURE REVIEWS GENETICS
- Biases in Illumina transcriptome sequencing caused by random hexamer priming
- (2010) Kasper D. Hansen et al. NUCLEIC ACIDS RESEARCH
- SHORT HYPOCOTYL UNDER BLUE1 Truncations and Mutations Alter Its Association with a Signaling Protein Complex in Arabidopsis
- (2010) Y. Zhou et al. PLANT CELL
- A scaling normalization method for differential expression analysis of RNA-seq data
- (2010) Mark D Robinson et al. GENOME BIOLOGY
- De novo transcriptome assembly with ABySS
- (2009) I. Birol et al. BIOINFORMATICS
- edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
- (2009) M. D. Robinson et al. BIOINFORMATICS
- BLAST+: architecture and applications
- (2009) Christiam Camacho et al. BMC BIOINFORMATICS
- Comparison of the transcriptomes of American chestnut (Castanea dentata) and Chinese chestnut (Castanea mollissima) in response to the chestnut blight infection
- (2009) Abdelali Barakat et al. BMC PLANT BIOLOGY
- RNA-mediated chromatin-based silencing in plants
- (2009) Marjori Matzke et al. CURRENT OPINION IN CELL BIOLOGY
- A leaf-based assay using interchangeable design principles to rapidly assemble multistep recombinant pathways
- (2009) Craig C. Wood et al. PLANT BIOTECHNOLOGY JOURNAL
- Virus-induced gene silencing: A versatile tool for discovery of gene functions in plants
- (2009) Arunima Purkayastha et al. PLANT PHYSIOLOGY AND BIOCHEMISTRY
- SHRiMP: Accurate Mapping of Short Color-space Reads
- (2009) Stephen M. Rumble et al. PLoS Computational Biology
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- Nicotiana benthamiana: Its History and Future as a Model for Plant–Pathogen Interactions
- (2008) Michael M. Goodin et al. MOLECULAR PLANT-MICROBE INTERACTIONS
- Mapping and quantifying mammalian transcriptomes by RNA-Seq
- (2008) Ali Mortazavi et al. NATURE METHODS
- Assessing the gene space in draft genomes
- (2008) Genis Parra et al. NUCLEIC ACIDS RESEARCH
- NCBI Reference Sequences: current status, policy and new initiatives
- (2008) K. D. Pruitt et al. NUCLEIC ACIDS RESEARCH
- RNA Silencing in Plants: Yesterday, Today, and Tomorrow
- (2008) A. Eamens et al. PLANT PHYSIOLOGY
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