Advances in genomics for flatfish aquaculture

Dietary protein source or energy levels have no major impact on growth performance, nutrient utilisation or flesh fatty acids composition of market-sized Senegalese sole

(2011) L.M.P. Valente et al.   AQUACULTURE

Microarrays, deep sequencing and the true measure of the transcriptome

(2011) John H Malone et al.   BMC BIOLOGY

Microarrays and RNA-Seq identify molecular mechanisms driving the end of nephron production

(2011) Eric W Brunskill et al.   BMC DEVELOPMENTAL BIOLOGY

The zebrafish transcriptome during early development

(2011) Liselotte Vesterlund et al.   BMC DEVELOPMENTAL BIOLOGY

QTL detection for Aeromonas salmonicida resistance related traits in turbot (Scophthalmus maximus)

(2011) Silvia T Rodríguez-Ramilo et al.   BMC GENOMICS

BAC library resources for map-based cloning and physical map construction in barley (Hordeum vulgare L.)

(2011) Daniela Schulte et al.   BMC GENOMICS

Using RNA-Seq for gene identification, polymorphism detection and transcript profiling in two alfalfa genotypes with divergent cell wall composition in stems

(2011) S Samuel Yang et al.   BMC GENOMICS

Detection of growth-related QTL in turbot (Scophthalmus maximus)

(2011) Enrique Sánchez-Molano et al.   BMC GENOMICS

Genomic characterization, phylogeny and gene regulation of g-type lysozyme in sole (Solea senegalensis)

(2011) Marian Ponce et al.   FISH & SHELLFISH IMMUNOLOGY

Forensic DNA analysis reveals use of high trophic level marine fish in commercial aquaculture fish meals

(2011) A. Ardura et al.   FISHERIES RESEARCH

Differential expression in RNA-seq: A matter of depth

(2011) S. Tarazona et al.   GENOME RESEARCH

Zebrafish mRNA sequencing deciphers novelties in transcriptome dynamics during maternal to zygotic transition

(2011) Håvard Aanes et al.   GENOME RESEARCH

Sequencing technologies and genome sequencing

(2011) Chandra Shekhar Pareek et al.   JOURNAL OF APPLIED GENETICS

MicroRNAs in the shoot apical meristem of soybean

(2011) Chui E. Wong et al.   JOURNAL OF EXPERIMENTAL BOTANY

The impact of next-generation sequencing on genomics

(2011) Jun Zhang et al.   Journal of Genetics and Genomics

Gene Expression Profiles of the Spleen, Liver, and Head Kidney in Turbot (Scophthalmus maximus) Along the Infection Process with Aeromonas salmonicida Using an Immune-Enriched Oligo-microarray

(2011) Adrián Millán et al.   MARINE BIOTECHNOLOGY

Linkage Mapping of Toll-Like Receptors (TLRs) in Japanese Flounder, Paralichthys olivaceus

(2011) Seong Don Hwang et al.   MARINE BIOTECHNOLOGY

Field guide to next-generation DNA sequencers

(2011) TRAVIS C. GLENN   Molecular Ecology Resources

Next-generation transcriptome assembly

(2011) Jeffrey A. Martin et al.   NATURE REVIEWS GENETICS

Identification and Differential Expression of MicroRNAs during Metamorphosis of the Japanese Flounder (Paralichthys olivaceus)

(2011) Yuanshuai Fu et al.   PLoS One

The Genome Sequence of the North-European Cucumber (Cucumis sativus L.) Unravels Evolutionary Adaptation Mechanisms in Plants

(2011) Rafał Wóycicki et al.   PLoS One

The Genome Sequence of the Leaf-Cutter Ant Atta cephalotes Reveals Insights into Its Obligate Symbiotic Lifestyle

(2011) Garret Suen et al.   PLoS Genetics

Genetic linkage mapping of turbot (Scophthalmus maximus L.) using microsatellite markers and its application in QTL analysis

(2010) Xiaohong Ruan et al.   AQUACULTURE

Sequencing, de novo annotation and analysis of the first Anguilla anguilla transcriptome: EeelBase opens new perspectives for the study of the critically endangered european eel

(2010) Alessandro Coppe et al.   BMC GENOMICS

A second generation genetic linkage map of Japanese flounder (Paralichthys olivaceus)

(2010) Cecilia Castano-Sanchez et al.   BMC GENOMICS

Transcriptome and expression profiling analysis revealed changes of multiple signaling pathways involved in immunity in the large yellow croaker during Aeromonas hydrophila infection

(2010) Yinnan Mu et al.   BMC GENOMICS

Rnnotator: an automated de novo transcriptome assembly pipeline from stranded RNA-Seq reads

(2010) Jeffrey Martin et al.   BMC GENOMICS

A comparison of massively parallel nucleotide sequencing with oligonucleotide microarrays for global transcription profiling

(2010) James R Bradford et al.   BMC GENOMICS

Optimization of de novo transcriptome assembly from next-generation sequencing data

(2010) Y. Surget-Groba et al.   GENOME RESEARCH

A window into third-generation sequencing

(2010) E. E. Schadt et al.   HUMAN MOLECULAR GENETICS

Genomic resources for flatfish research and their applications

(2010) J. Cerdà et al.   JOURNAL OF FISH BIOLOGY

Generation and analysis of 10 000 ESTs from the half-smooth tongue soleCynoglossus semilaevisand identification of microsatellite and SNP markers

(2010) Z. Sha et al.   JOURNAL OF FISH BIOLOGY

SNP discovery in the bovine milk transcriptome using RNA-Seq technology

(2010) Angela Cánovas et al.   MAMMALIAN GENOME

Comprehensive comparative analysis of strand-specific RNA sequencing methods

(2010) Joshua Z Levin et al.   NATURE METHODS

De Novo Transcriptome Sequencing in Anopheles funestus Using Illumina RNA-Seq Technology

(2010) Jacob E. Crawford et al.   PLoS One

From Fishing to the Sustainable Farming of Carnivorous Marine Finfish

(2010) A. Welch et al.   REVIEWS IN FISHERIES SCIENCE

Multi-Platform Next-Generation Sequencing of the Domestic Turkey (Meleagris gallopavo): Genome Assembly and Analysis

(2010) Rami A. Dalloul et al.   PLOS BIOLOGY

Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data

(2009) Jacob F. Degner et al.   BIOINFORMATICS

Will the Oceans Help Feed Humanity?

(2009) Carlos M. Duarte et al.   BIOSCIENCE

Measuring differential gene expression by short read sequencing: quantitative comparison to 2-channel gene expression microarrays

(2009) Joshua S Bloom et al.   BMC GENOMICS

Next-Generation Sequencing: From Basic Research to Diagnostics

(2009) K. V. Voelkerding et al.   CLINICAL CHEMISTRY

Current-generation high-throughput sequencing: deepening insights into mammalian transcriptomes

(2009) B. J. Blencowe et al.   GENES & DEVELOPMENT

Identification of the Major Sex-Determining Region of Turbot ( Scophthalmus maximus )

(2009) Paulino Martínez et al.   GENETICS

Food analysis and Foodomics

(2009) Alejandro Cifuentes   JOURNAL OF CHROMATOGRAPHY A

Fisheries-induced evolution in growth, maturation and reproductive investment of the sexually dimorphic North Sea plaice (Pleuronectes platessa L.)

(2009) L. van Walraven et al.   JOURNAL OF SEA RESEARCH

Construction of a Genetic Linkage Map and Mapping of a Female-Specific DNA Marker in Half-Smooth Tongue Sole (Cynoglossus semilaevis)

(2009) Xiaolin Liao et al.   MARINE BIOTECHNOLOGY

Design and Performance of a Turbot (Scophthalmus maximus) Oligo-microarray Based on ESTs from Immune Tissues

(2009) Adrián Millán et al.   MARINE BIOTECHNOLOGY

Gene structure of the Kiss1 receptor-2 (Kiss1r-2) in the Atlantic halibut: Insights into the evolution and regulation of Kiss1r genes

(2009) Alejandro S. Mechaly et al.   MOLECULAR AND CELLULAR ENDOCRINOLOGY

The sequence and de novo assembly of the giant panda genome

(2009) Ruiqiang Li et al.   NATURE

Targeted capture and massively parallel sequencing of 12 human exomes

(2009) Sarah B. Ng et al.   NATURE

The genome of the cucumber, Cucumis sativus L.

(2009) Sanwen Huang et al.   NATURE GENETICS

Sequencing technologies — the next generation

(2009) Michael L. Metzker   NATURE REVIEWS GENETICS

Feeding aquaculture in an era of finite resources

(2009) R. L. Naylor et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Fish proteome analysis: Model organisms and non-sequenced species

(2009) Ignasi Forné et al.   PROTEOMICS

Global overview on the use of fish meal and fish oil in industrially compounded aquafeeds: Trends and future prospects

(2008) Albert G.J. Tacon et al.   AQUACULTURE

From the bakery to the brain business: developing inducible yeast models of human neurodegenerative disorders

(2008) Alejandro Ocampo et al.   BIOTECHNIQUES

MHC polymorphism and disease resistance to Vibrio anguillarum in 12 selective Japanese flounder (Paralichthys olivaceus) families

(2008) T XU et al.   FISH & SHELLFISH IMMUNOLOGY

RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays

(2008) J. C. Marioni et al.   GENOME RESEARCH

Linking the Genomes of Nonmodel Teleosts Through Comparative Genomics

(2008) E. Sarropoulou et al.   MARINE BIOTECHNOLOGY

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

The Molecular and Endocrine Basis of Flatfish Metamorphosis

(2008) Deborah M. Power et al.   REVIEWS IN FISHERIES SCIENCE

Genomics Toolbox for Farmed Fish

(2008) Adelino V. M. Canario et al.   REVIEWS IN FISHERIES SCIENCE

MicroRNAs and RNA Interference in Zebrafish Development

(2008) Gerrit Begemann   Zebrafish

Thyroid hormones down-regulate thyrotropin β subunit and thyroglobulin during metamorphosis in the flatfish Senegalese sole (Solea senegalensis Kaup)

(2007) Manuel Manchado et al.   GENERAL AND COMPARATIVE ENDOCRINOLOGY