The MULTICOM toolbox for protein structure prediction

SPINE-D: Accurate Prediction of Short and Long Disordered Regions by a Single Neural-Network Based Method

(2012) Tuo Zhang et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

Predicting residue–residue contacts using random forest models

(2011) Yunqi Li et al.   BIOINFORMATICS

APOLLO: a quality assessment service for single and multiple protein models

(2011) Z. Wang et al.   BIOINFORMATICS

Improving protein fold recognition and template-based modeling by employing probabilistic-based matching between predicted one-dimensional structural properties of query and corresponding native properties of templates

(2011) Y. Yang et al.   BIOINFORMATICS

An iterative self-refining and self-evaluating approach for protein model quality estimation

(2011) Zheng Wang et al.   PROTEIN SCIENCE

Evaluation of model quality predictions in CASP9

(2011) Andriy Kryshtafovych et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

CASP9 assessment of free modeling target predictions

(2011) Lisa Kinch et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Evaluation of residue-residue contact predictions in CASP9

(2011) Bohdan Monastyrskyy et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Evaluation of disorder predictions in CASP9

(2011) Bohdan Monastyrskyy et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Assessment of template based protein structure predictions in CASP9

(2011) Valerio Mariani et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Assessment of protein structure refinement in CASP9

(2011) Justin L. MacCallum et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Improving Protein Structure Prediction Using Multiple Sequence-Based Contact Predictions

(2011) Sitao Wu et al.   STRUCTURE

DomSVR: domain boundary prediction with support vector regression from sequence information alone

(2010) Peng Chen et al.   AMINO ACIDS

Improved sequence-based prediction of disordered regions with multilayer fusion of multiple information sources

(2010) Marcin J. Mizianty et al.   BIOINFORMATICS

MULTICOM: a multi-level combination approach to protein structure prediction and its assessments in CASP8

(2010) Z. Wang et al.   BIOINFORMATICS

Low-homology protein threading

(2010) J. Peng et al.   BIOINFORMATICS

I-TASSER: a unified platform for automated protein structure and function prediction

(2010) Ambrish Roy et al.   Nature Protocols

Using multi-data hidden Markov models trained on local neighborhoods of protein structure to predict residue–residue contacts

(2009) Patrik Björkholm et al.   BIOINFORMATICS

Rapid model quality assessment for protein structure predictions using the comparison of multiple models without structural alignments

(2009) L. J. McGuffin et al.   BIOINFORMATICS

Prediction of global and local quality of CASP8 models by MULTICOM series

(2009) Jianlin Cheng et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Assessment of global and local model quality in CASP8 using Pcons and ProQ

(2009) Per Larsson et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

A generic method for assignment of reliability scores applied to solvent accessibility predictions

(2009) Bent Petersen et al.   BMC STRUCTURAL BIOLOGY

A comprehensive assessment of sequence-based and template-based methods for protein contact prediction

(2008) Sitao Wu et al.   BIOINFORMATICS

The ModFOLD server for the quality assessment of protein structural models

(2008) L. J. McGuffin   BIOINFORMATICS

HMMEditor: a visual editing tool for profile hidden Markov model

(2008) Jianyong Dai et al.   BMC GENOMICS

Progress and challenges in protein structure prediction

(2008) Yang Zhang   CURRENT OPINION IN STRUCTURAL BIOLOGY

Structural genomics: from genes to structures with valuable materials and many questions in between

(2008) Brian G Fox et al.   NATURE METHODS