Evaluation of residue-residue contact predictions in CASP9

Multibody coarse-grained potentials for native structure recognition and quality assessment of protein models

(2011) Pawel Gniewek et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

CASP9 target classification

(2011) Lisa N. Kinch et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

CASP9 results compared to those of previous casp experiments

(2011) Andriy Kryshtafovych et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Improving Protein Structure Prediction Using Multiple Sequence-Based Contact Predictions

(2011) Sitao Wu et al.   STRUCTURE

I-TASSER: a unified platform for automated protein structure and function prediction

(2010) Ambrish Roy et al.   Nature Protocols

Prediction of protein long-range contacts using an ensemble of genetic algorithm classifiers with sequence profile centers

(2010) Peng Chen et al.   BMC STRUCTURAL BIOLOGY

Using multi-data hidden Markov models trained on local neighborhoods of protein structure to predict residue–residue contacts

(2009) Patrik Björkholm et al.   BIOINFORMATICS

NNcon: improved protein contact map prediction using 2D-recursive neural networks

(2009) A. N. Tegge et al.   NUCLEIC ACIDS RESEARCH

SAM-T08, HMM-based protein structure prediction

(2009) K. Karplus   NUCLEIC ACIDS RESEARCH

Assessment of domain boundary predictions and the prediction of intramolecular contacts in CASP8

(2009) Iakes Ezkurdia et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Prediction of global and local quality of CASP8 models by MULTICOM series

(2009) Jianlin Cheng et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

I-TASSER: Fully automated protein structure prediction in CASP8

(2009) Yang Zhang   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Using inferred residue contacts to distinguish between correct and incorrect protein models

(2008) Christopher S. Miller et al.   BIOINFORMATICS

Prediction of recursive convex hull class assignments for protein residues

(2008) Michael Stout et al.   BIOINFORMATICS

FT-COMAR: fault tolerant three-dimensional structure reconstruction from protein contact maps

(2008) Marco Vassura et al.   BIOINFORMATICS

A comprehensive assessment of sequence-based and template-based methods for protein contact prediction

(2008) Sitao Wu et al.   BIOINFORMATICS

Predicting Key Long-Range Interaction Sites by B-Factors

(2008) Peng Chen et al.   PROTEIN AND PEPTIDE LETTERS

Prediction of topological contacts in proteins using learning classifier systems

(2008) Michael Stout et al.   SOFT COMPUTING