Profile of bacterial communities in South African mine-water samples using Illumina next-generation sequencing platform

Correlating Microbial Diversity Patterns with Geochemistry in an Extreme and Heterogeneous Environment of Mine Tailings

(2014) Jun Liu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Diversity, abundance, and spatial distribution of riverine microbial communities response to effluents from swine farm versus farmhouse restaurant

(2014) Xiao-Ming Lu et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Response of phyllosphere bacterial communities to elevated CO2 during rice growing season

(2014) Gaidi Ren et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

A metagenomic assessment of the bacteria associated with Lucilia sericata and Lucilia cuprina (Diptera: Calliphoridae)

(2014) Baneshwar Singh et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Microbial community composition and dynamics in high-temperature biogas reactors using industrial bioethanol waste as substrate

(2014) Immo Röske et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Pyrosequencing analysis of bacterial community and assembly in activated sludge samples from different geographic regions in China

(2014) Dayong Zhao et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Comparison of bacterial community in aqueous and oil phases of water-flooded petroleum reservoirs using pyrosequencing and clone library approaches

(2014) Li-Ying Wang et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Illumina-based analysis of endophytic bacterial diversity and space-time dynamics in sugar beet on the north slope of Tianshan mountain

(2014) YingWu Shi et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Metal(loid) Bioaccessibility Dictates Microbial Community Composition in Acid Sulfate Soil Horizons and Sulfidic Drain Sediments

(2014) Jacqueline L. Stroud et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

16S rDNA Pyrosequencing Analysis of Bacterial Community in Heavy Metals Polluted Soils

(2014) Marcin Gołębiewski et al.   MICROBIAL ECOLOGY

Microbial Diversity of Emalahleni Mine Water in South Africa and Tolerance Ability of the Predominant Organism to Vanadium and Nickel

(2014) Ilunga Kamika et al.   PLoS One

Genomic Encyclopedia of Bacteria and Archaea: Sequencing a Myriad of Type Strains

(2014) Nikos C. Kyrpides et al.   PLOS BIOLOGY

Improved Selection of Internal Transcribed Spacer-Specific Primers Enables Quantitative, Ultra-High-Throughput Profiling of Fungal Communities

(2013) Nicholas A. Bokulich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Genome-wide transcriptional responses of two metal-tolerant symbiotic Mesorhizobium isolates to Zinc and Cadmium exposure

(2013) Géraldine Maynaud et al.   BMC GENOMICS

A Culture-Independent Sequence-Based Metagenomics Approach to the Investigation of an Outbreak of Shiga-Toxigenic Escherichia coli O104:H4

(2013) Nicholas J. Loman et al.   JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION

Application of Illumina next-generation sequencing to characterize the bacterial community of the Upper Mississippi River

(2013) C. Staley et al.   JOURNAL OF APPLIED MICROBIOLOGY

Single-stranded DNA library preparation for the sequencing of ancient or damaged DNA

(2013) Marie-Theres Gansauge et al.   Nature Protocols

Sex Differences in the Gut Microbiome Drive Hormone-Dependent Regulation of Autoimmunity

(2013) J. G. M. Markle et al.   SCIENCE

Rapid Bacterial Whole-Genome Sequencing to Enhance Diagnostic and Public Health Microbiology

(2013) Sandra Reuter et al.   JAMA Internal Medicine

Selection for Cu-Tolerant Bacterial Communities with Altered Composition, but Unaltered Richness, via Long-Term Cu Exposure

(2012) Jeanette Berg et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Bacterial communities in different sections of a municipal wastewater treatment plant revealed by 16S rDNA 454 pyrosequencing

(2012) Lin Ye et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Contemporary environmental variation determines microbial diversity patterns in acid mine drainage

(2012) Jia-Liang Kuang et al.   ISME Journal

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

In-depth Characterization via Complementing Culture-Independent Approaches of the Microbial Community in an Acidic Hot Spring of the Colombian Andes

(2011) Laura C. Bohorquez et al.   MICROBIAL ECOLOGY

Tracking the prokaryotic diversity in acid mine drainage-contaminated environments: A review of molecular methods

(2011) Bidyut R. Mohapatra et al.   MINERALS ENGINEERING

Experimental and analytical tools for studying the human microbiome

(2011) Justin Kuczynski et al.   NATURE REVIEWS GENETICS

Microbial community structures in anoxic freshwater lake sediment along a metal contamination gradient

(2010) Heidi L Gough et al.   ISME Journal

Archaea and bacteria with surprising microdiversity show shifts in dominance over 1,000-year time scales in hydrothermal chimneys

(2010) W. J. Brazelton et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Accurate determination of microbial diversity from 454 pyrosequencing data

(2009) Christopher Quince et al.   NATURE METHODS

The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes

(2008) F Meyer et al.   BMC BIOINFORMATICS