Responses of fungal community composition to long-term chemical and organic fertilization strategies in Chinese Mollisols

Consistent effects of nitrogen fertilization on soil bacterial communities in black soils for two crop seasons in China

(2017) Jing Zhou et al.   Scientific Reports

Mycothermus thermophilus (Syn. Scytalidium thermophilum ): Repertoire of a diverse array of efficient cellulases and hemicellulases in the secretome revealed

(2016) Neha Basotra et al.   BIORESOURCE TECHNOLOGY

Genome sequence of the filamentous soil fungus Chaetomium cochliodes reveals abundance of genes for heme enzymes from all peroxidase and catalase superfamilies

(2016) Marcel Zámocký et al.   BMC GENOMICS

Thirty four years of nitrogen fertilization decreases fungal diversity and alters fungal community composition in black soil in northeast China

(2016) Jing Zhou et al.   SOIL BIOLOGY & BIOCHEMISTRY

Denitrification potential under different fertilization regimes is closely coupled with changes in the denitrifying community in a black soil

(2015) Chang Yin et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Comparing the effect of digestate and chemical fertiliser on soil bacteria

(2015) Melanie Sapp et al.   APPLIED SOIL ECOLOGY

Revisiting the hypothesis that fungal-to-bacterial dominance characterizes turnover of soil organic matter and nutrients

(2015) Johannes Rousk et al.   ECOLOGICAL MONOGRAPHS

Ectomycorrhiza of Populus

(2015) Agnieszka Szuba   FOREST ECOLOGY AND MANAGEMENT

Towards a natural classification and backbone tree for Sordariomycetes

(2015) Sajeewa S. N. Maharachchikumbura et al.   FUNGAL DIVERSITY

Soil pH determines the alpha diversity but not beta diversity of soil fungal community along altitude in a typical Tibetan forest ecosystem

(2015) Jun-Tao Wang et al.   JOURNAL OF SOILS AND SEDIMENTS

Phylogenetic, taxonomic and functional diversity of fungal denitrifiers and associated N2O production efficacy

(2015) Nape Mothapo et al.   SOIL BIOLOGY & BIOCHEMISTRY

Differential responses of total and active soil microbial communities to long-term experimental N deposition

(2015) Zachary B. Freedman et al.   SOIL BIOLOGY & BIOCHEMISTRY

Influence of 34-years of fertilization on bacterial communities in an intensively cultivated black soil in northeast China

(2015) Jing Zhou et al.   SOIL BIOLOGY & BIOCHEMISTRY

Soil carbon content drives the biogeographical distribution of fungal communities in the black soil zone of northeast China

(2015) Junjie Liu et al.   SOIL BIOLOGY & BIOCHEMISTRY

Nitrogen fertilizer dose alters fungal communities in sugarcane soil and rhizosphere

(2015) Chanyarat Paungfoo-Lonhienne et al.   Scientific Reports

Watershed-Scale Fungal Community Characterization along a pH Gradient in a Subsurface Environment Cocontaminated with Uranium and Nitrate

(2014) Puja Jasrotia et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Uncertainty assessment for mapping changes in soil organic matter using sparse legacy soil data and dense new-measured data in a typical black soil region of China

(2014) Yongcun Zhao et al.   Environmental Earth Sciences

Different Continuous Cropping Spans Significantly Affect Microbial Community Membership and Structure in a Vanilla-Grown Soil as Revealed by Deep Pyrosequencing

(2014) Wu Xiong et al.   MICROBIAL ECOLOGY

Arbuscular mycorrhizal fungal community response to warming and nitrogen addition in a semiarid steppe ecosystem

(2014) Yong-Chan Kim et al.   MYCORRHIZA

Importance of Saprotrophic Freshwater Fungi for Pollen Degradation

(2014) Christian Wurzbacher et al.   PLoS One

Fungal pathogen accumulation at the expense of plant-beneficial fungi as a consequence of consecutive peanut monoculturing

(2014) Xiao-gang Li et al.   SOIL BIOLOGY & BIOCHEMISTRY

Long-term manure amendments enhance neutral sugar accumulation in bulk soil and particulate organic matter in a Mollisol

(2014) Hongtu Xie et al.   SOIL BIOLOGY & BIOCHEMISTRY

Long-term effects of mineral fertilizers on soil microorganisms – A review

(2014) Daniel Geisseler et al.   SOIL BIOLOGY & BIOCHEMISTRY

Nutrient transfer in plant–fungal symbioses

(2014) Scott W. Behie et al.   TRENDS IN PLANT SCIENCE

Improved Selection of Internal Transcribed Spacer-Specific Primers Enables Quantitative, Ultra-High-Throughput Profiling of Fungal Communities

(2013) Nicholas A. Bokulich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Temporal variability in soil microbial communities across land-use types

(2013) Christian L Lauber et al.   ISME Journal

Nitrogen deposition alters plant-fungal relationships: linking belowground dynamics to aboveground vegetation change

(2013) Sarah L. Dean et al.   MOLECULAR ECOLOGY

Towards a unified paradigm for sequence-based identification of fungi

(2013) Urmas Kõljalg et al.   MOLECULAR ECOLOGY

ITS1 versus ITS2 as DNA metabarcodes for fungi

(2013) R. Blaalid et al.   Molecular Ecology Resources

Sequencing-Based Analysis of the Bacterial and Fungal Composition of Kefir Grains and Milks from Multiple Sources

(2013) Alan J. Marsh et al.   PLoS One

The effects of 55 years of different inorganic fertiliser regimes on soil properties and microbial community composition

(2013) Alwyn Williams et al.   SOIL BIOLOGY & BIOCHEMISTRY

Geographic distance and pH drive bacterial distribution in alkaline lake sediments across Tibetan Plateau

(2012) Jinbo Xiong et al.   ENVIRONMENTAL MICROBIOLOGY

Consistent effects of nitrogen amendments on soil microbial communities and processes across biomes

(2012) Kelly S. Ramirez et al.   GLOBAL CHANGE BIOLOGY

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

(2012) Nicholas A Bokulich et al.   NATURE METHODS

Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi

(2012) C. L. Schoch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cross-biome metagenomic analyses of soil microbial communities and their functional attributes

(2012) N. Fierer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Digging deeper to find unique microbial communities: The strong effect of depth on the structure of bacterial and archaeal communities in soil

(2012) Kathryn G. Eilers et al.   SOIL BIOLOGY & BIOCHEMISTRY

Soil pH drives the spatial distribution of bacterial communities along elevation on Changbai Mountain

(2012) Congcong Shen et al.   SOIL BIOLOGY & BIOCHEMISTRY

Local Adaptation to Soil Hypoxia Determines the Structure of an Arbuscular Mycorrhizal Fungal Community in Roots from Natural CO2Springs

(2011) Irena Maček et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Assessment of soil microbial diversity measurements as indicators of soil functioning in organic and conventional horticulture systems

(2011) Romina Romaniuk et al.   ECOLOGICAL INDICATORS

Soil characteristics more strongly influence soil bacterial communities than land-use type

(2011) Eiko E. Kuramae et al.   FEMS MICROBIOLOGY ECOLOGY

Illumina-based analysis of microbial community diversity

(2011) Patrick H Degnan et al.   ISME Journal

Ectomycorrhizal fungi: the symbiotic route to the root for phosphorus in forest soils

(2011) John W. G. Cairney   PLANT AND SOIL

Simulated Atmospheric N Deposition Alters Fungal Community Composition and Suppresses Ligninolytic Gene Expression in a Northern Hardwood Forest

(2011) Ivan P. Edwards et al.   PLoS One

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

Molecular diversity of fungal communities in agricultural soils from Lower Austria

(2010) Sylvia Klaubauf et al.   FUNGAL DIVERSITY

Soil bacterial and fungal communities across a pH gradient in an arable soil

(2010) Johannes Rousk et al.   ISME Journal

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

The UNITE database for molecular identification of fungi - recent updates and future perspectives

(2010) Kessy Abarenkov et al.   NEW PHYTOLOGIST

Significant Acidification in Major Chinese Croplands

(2010) J. H. Guo et al.   SCIENCE

Considering fungal:bacterial dominance in soils – Methods, controls, and ecosystem implications

(2010) Michael S. Strickland et al.   SOIL BIOLOGY & BIOCHEMISTRY

Contrasting Soil pH Effects on Fungal and Bacterial Growth Suggest Functional Redundancy in Carbon Mineralization

(2009) J. Rousk et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Physiological traits of Penicillium glabrum strain LCP 08.5568, a filamentous fungus isolated from bottled aromatised mineral water

(2009) L. Nevarez et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Comparative Resistance and Resilience of Soil Microbial Communities and Enzyme Activities in Adjacent Native Forest and Agricultural Soils

(2009) Guilherme Chaer et al.   MICROBIAL ECOLOGY

454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity

(2009) M. Buée et al.   NEW PHYTOLOGIST

Uptake of organic nitrogen by plants

(2009) Torgny Näsholm et al.   NEW PHYTOLOGIST

Host Specialization and Phylogenetic Diversity ofCorynespora cassiicola

(2009) L. J. Dixon et al.   PHYTOPATHOLOGY

The microbial PLFA composition as affected by pH in an arable soil

(2009) Johannes Rousk et al.   SOIL BIOLOGY & BIOCHEMISTRY

The effects of chronic nitrogen fertilization on alpine tundra soil microbial communities: implications for carbon and nitrogen cycling

(2008) Diana R. Nemergut et al.   ENVIRONMENTAL MICROBIOLOGY

Microbial composition and diversity of an upland red soil under long-term fertilization treatments as revealed by culture-dependent and culture-independent approaches

(2008) Ji-Zheng He et al.   JOURNAL OF SOILS AND SEDIMENTS

Bacterial Community Structure and Diversity in a Black Soil as Affected by Long-Term Fertilization

(2008) Dan WEI et al.   PEDOSPHERE

Quantitative assessment of the fungal contribution to microbial tissue in soil

(2008) R JOERGENSEN et al.   SOIL BIOLOGY & BIOCHEMISTRY