The Complete Plastome Sequences of Seven Species in Gentiana sect. Kudoa (Gentianaceae): Insights Into Plastid Gene Loss and Molecular Evolution

Chloroplast phylogeography of New Zealand Sophora trees (Fabaceae): extensive hybridization and widespread Last Glacial Maximum survival

(2017) Lara D. Shepherd et al.   JOURNAL OF BIOGEOGRAPHY

Plastid phylogenomics and adaptive evolution of Gaultheria series Trichophyllae (Ericaceae), a clade from sky islands of the Himalaya-Hengduan Mountains

(2017) Ming-Ying Zhang et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Diversification of Rosaceae since the Late Cretaceous based on plastid phylogenomics

(2017) Shu-Dong Zhang et al.   NEW PHYTOLOGIST

The Complete Plastome Sequences of Four Orchid Species: Insights into the Evolution of the Orchidaceae and the Utility of Plastomic Mutational Hotspots

(2017) Zhitao Niu et al.   Frontiers in Plant Science

Chloroplast genome structures in Gentiana (Gentianaceae), based on three medicinal alpine plants used in Tibetan herbal medicine

(2016) Lianghong Ni et al.   CURRENT GENETICS

The complete chloroplast genome of Gentiana straminea (Gentianaceae), an endemic species to the Sino-Himalayan subregion

(2016) Lianghong Ni et al.   GENE

Out-of-Tibet: the spatio-temporal evolution ofGentiana(Gentianaceae)

(2016) Adrien Favre et al.   JOURNAL OF BIOGEOGRAPHY

From barcodes to genomes: extending the concept of DNA barcoding

(2016) Eric Coissac et al.   MOLECULAR ECOLOGY

Phylogenomics and Plastome Evolution of Tropical Forest Grasses (Leptaspis, Streptochaeta: Poaceae)

(2016) Sean V. Burke et al.   Frontiers in Plant Science

The complete chloroplast genome sequence ofGentiana lawrenceivar. farreri(Gentianaceae) and comparative analysis with its congeneric species

(2016) Peng-Cheng Fu et al.   PeerJ

Exceptional reduction of the plastid genome of saguaro cactus (Carnegiea gigantea): Loss of the ndh gene suite and inverted repeat

(2015) M. J. Sanderson et al.   AMERICAN JOURNAL OF BOTANY

Back to Gondwanaland: can ancient vicariance explain (some) Indian Ocean disjunct plant distributions?: Figure 1.

(2015) Michael D. Pirie et al.   Biology Letters

NDH expression marks major transitions in plant evolution and reveals coordinate intracellular gene loss

(2015) Tracey A Ruhlman et al.   BMC PLANT BIOLOGY

Plastid phylogenomics and molecular evolution of Alismatales

(2015) T. Gregory Ross et al.   CLADISTICS

A Phylogenetic Analysis of 34 Chloroplast Genomes Elucidates the Relationships between Wild and Domestic Species within the GenusCitrus

(2015) Jose Carbonell-Caballero et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phylogenetic analyses of Spiraea (Rosaceae) distributed in the Qinghai-Tibetan Plateau and adjacent regions: insights from molecular data

(2015) Gulzar Khan et al.   PLANT SYSTEMATICS AND EVOLUTION

The location and translocation of ndh genes of chloroplast origin in the Orchidaceae family

(2015) Choun-Sea Lin et al.   Scientific Reports

Complete Chloroplast Genome Sequence of Tartary Buckwheat (Fagopyrum tataricum) and Comparative Analysis with Common Buckwheat (F. esculentum)

(2015) Kwang-Soo Cho et al.   PLoS One

Seven New Complete Plastome Sequences Reveal Rampant Independent Loss of the ndh Gene Family across Orchids and Associated Instability of the Inverted Repeat/Small Single-Copy Region Boundaries

(2015) Hyoung Tae Kim et al.   PLoS One

Chloroplast DNA sequence utility for the lowest phylogenetic and phylogeographic inferences in angiosperms: The tortoise and the hare IV

(2014) Joey Shaw et al.   AMERICAN JOURNAL OF BOTANY

Plant DNA barcoding: from gene to genome

(2014) Xiwen Li et al.   BIOLOGICAL REVIEWS

Evolutionary history and underlying adaptation of alpine plants on the Qinghai-Tibet Plateau

(2014) Jian-Quan LIU et al.   Journal of Systematics and Evolution

Evolutionary diversifications of plants on the Qinghai-Tibetan Plateau

(2014) Jun Wen et al.   Frontiers in Genetics

Strong genetic structure over the American continents and transoceanic dispersal in the mangrove genus Rhizophora (Rhizophoraceae) revealed by broad-scale nuclear and chloroplast DNA analysis

(2013) Koji Takayama et al.   AMERICAN JOURNAL OF BOTANY

Complete chloroplast genome of the genus Cymbidium: lights into the species identification, phylogenetic implications and population genetic analyses

(2013) Jun-Bo Yang et al.   BMC EVOLUTIONARY BIOLOGY

Phylogenetic Analysis of 47 Chloroplast Genomes Clarifies the Contribution of Wild Species to the Domesticated Apple Maternal Line

(2013) Svetlana V. Nikiforova et al.   MOLECULAR BIOLOGY AND EVOLUTION

Identification of chloroplast genome loci suitable for high-resolution phylogeographic studies ofColocasia esculenta(L.) Schott (Araceae) and closely related taxa

(2013) Ibrar Ahmed et al.   Molecular Ecology Resources

The Plastid Genome of Najas flexilis: Adaptation to Submersed Environments Is Accompanied by the Complete Loss of the NDH Complex in an Aquatic Angiosperm

(2013) Elena L. Peredo et al.   PLoS One

The plastid genome of the mycoheterotrophic Corallorhiza striata (Orchidaceae) is in the relatively early stages of degradation

(2012) Craig F. Barrett et al.   AMERICAN JOURNAL OF BOTANY

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

Loss of Different Inverted Repeat Copies from the Chloroplast Genomes of Pinaceae and Cupressophytes and Influence of Heterotachy on the Evaluation of Gymnosperm Phylogeny

(2011) Chung-Shien Wu et al.   Genome Biology and Evolution

Plastid ndh genes in plant evolution

(2010) Mercedes Martín et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

(2009) P. Librado et al.   BIOINFORMATICS

Genetic relationships in the genus Gentiana based on chloroplast DNA sequence data and nuclear DNA content

(2009) Kei-ichiro Mishiba et al.   BREEDING SCIENCE

Loss of all plastid ndh genes in Gnetales and conifers: extent and evolutionary significance for the seed plant phylogeny

(2009) Thomas Werner Anthony Braukmann et al.   CURRENT GENETICS

Genetic structure and evolution of Alpine polyploid complexes:Ranunculus kuepferi(Ranunculaceae) as a case study

(2009) J. BURNIER et al.   MOLECULAR ECOLOGY

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

jModelTest: Phylogenetic Model Averaging

(2008) D. Posada   MOLECULAR BIOLOGY AND EVOLUTION