The location and translocation of ndh genes of chloroplast origin in the Orchidaceae family

Investigating the Path of Plastid Genome Degradation in an Early-Transitional Clade of Heterotrophic Orchids, and Implications for Heterotrophic Angiosperms

(2014) Craig F. Barrett et al.   MOLECULAR BIOLOGY AND EVOLUTION

Complete chloroplast genome of the genus Cymbidium: lights into the species identification, phylogenetic implications and population genetic analyses

(2013) Jun-Bo Yang et al.   BMC EVOLUTIONARY BIOLOGY

Reconstruction of the Ancestral Plastid Genome in Geraniaceae Reveals a Correlation between Genome Rearrangements, Repeats, and Nucleotide Substitution Rates

(2013) Mao-Lun Weng et al.   MOLECULAR BIOLOGY AND EVOLUTION

OrchidBase 2.0: Comprehensive Collection of Orchidaceae Floral Transcriptomes

(2013) Wen-Chieh Tsai et al.   PLANT AND CELL PHYSIOLOGY

Orchidstra: An Integrated Orchid Functional Genomics Database

(2013) Chun-lin Su et al.   PLANT AND CELL PHYSIOLOGY

The Complete Chloroplast Genome of Banana (Musa acuminata, Zingiberales): Insight into Plastid Monocotyledon Evolution

(2013) Guillaume Martin et al.   PLoS One

Horizontal Transfer of Entire Genomes via Mitochondrial Fusion in the Angiosperm Amborella

(2013) D. W. Rice et al.   SCIENCE

Experimental Reconstruction of the Functional Transfer of Intron- Containing Plastid Genes to the Nucleus

(2012) Ignacia Fuentes et al.   CURRENT BIOLOGY

Plastid Sequences Contribute to Some Plant Mitochondrial Genes

(2012) D. Wang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Composition and physiological function of the chloroplast NADH dehydrogenase-like complex inMarchantia polymorpha

(2012) Minoru Ueda et al.   PLANT JOURNAL

Complete Chloroplast Genome Sequence of an Orchid Model Plant Candidate: Erycina pusilla Apply in Tropical Oncidium Breeding

(2012) I-Chun Pan et al.   PLoS One

A Complete Sequence and Transcriptomic Analyses of Date Palm (Phoenix dactylifera L.) Mitochondrial Genome

(2012) Yongjun Fang et al.   PLoS One

Evaluating Methods for Isolating Total RNA and Predicting the Success of Sequencing Phylogenetically Diverse Plant Transcriptomes

(2012) Marc T. J. Johnson et al.   PLoS One

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Determination of the melon chloroplast and mitochondrial genome sequences reveals that the largest reported mitochondrial genome in plants contains a significant amount of DNA having a nuclear origin

(2011) Luis Rodríguez-Moreno et al.   BMC GENOMICS

Integration of molecular biology tools for identifying promoters and genes abundantly expressed in flowers of Oncidium Gower Ramsey

(2011) Chen-Tran Hsu et al.   BMC PLANT BIOLOGY

Extending the Limited Transfer Window Hypothesis to Inter-organelle DNA Migration

(2011) David Roy Smith   Genome Biology and Evolution

The Origin and Characterization of New Nuclear Genes Originating from a Cytoplasmic Organellar Genome

(2011) A. H. Lloyd et al.   MOLECULAR BIOLOGY AND EVOLUTION

Origins and Recombination of the Bacterial-Sized Multichromosomal Mitochondrial Genome of Cucumber

(2011) A. J. Alverson et al.   PLANT CELL

An efficient procedure for plant organellar genome assembly, based on whole genome data from the 454 GS FLX sequencing platform

(2011) Tongwu Zhang et al.   Plant Methods

Recent loss of plastid-encoded ndh genes within Erodium (Geraniaceae)

(2011) J. Chris Blazier et al.   PLANT MOLECULAR BIOLOGY

Origin of eukaryotic cells: 40 years on

(2011) John M. Archibald   SYMBIOSIS

Assembling the Tree of the Monocotyledons: Plastome Sequence Phylogeny and Evolution of Poales1

(2010) Thomas J. Givnish et al.   ANNALS OF THE MISSOURI BOTANICAL GARDEN

Complete chloroplast genome of Oncidium Gower Ramsey and evaluation of molecular markers for identification and breeding in Oncidiinae

(2010) Fu-Hui Wu et al.   BMC PLANT BIOLOGY

Complete Plastid Genome Sequences of Three Rosids (Castanea, Prunus, Theobroma): Evidence for At Least Two Independent Transfers of rpl22 to the Nucleus

(2010) R. K. Jansen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Insights into the Evolution of Mitochondrial Genome Size from Complete Sequences of Citrullus lanatus and Cucurbita pepo (Cucurbitaceae)

(2010) A. J. Alverson et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phylogenetic relationships within Orchidaceae based on a low-copy nuclear coding gene, Xdh: Congruence with organellar and nuclear ribosomal DNA results

(2010) Marcin Górniak et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Plastid ndh genes in plant evolution

(2010) Mercedes Martín et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Genome size diversity in orchids: consequences and evolution

(2009) I. J. Leitch et al.   ANNALS OF BOTANY

Loss of all plastid ndh genes in Gnetales and conifers: extent and evolutionary significance for the seed plant phylogeny

(2009) Thomas Werner Anthony Braukmann et al.   CURRENT GENETICS

Fine-scale mergers of chloroplast and mitochondrial genes create functional, transcompartmentally chimeric mitochondrial genes

(2009) W. Hao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Reconstructing evolution: Gene transfer from plastids to the nucleus

(2008) Ralph Bock et al.   BIOESSAYS

The complete plastid genome sequence of Welwitschia mirabilis: an unusually compact plastome with accelerated divergence rates

(2008) Skip R McCoy et al.   BMC EVOLUTIONARY BIOLOGY

A Complex Containing PGRL1 and PGR5 Is Involved in the Switch between Linear and Cyclic Electron Flow in Arabidopsis

(2008) Giovanni DalCorso et al.   CELL