The Complete Plastome Sequences of Four Orchid Species: Insights into the Evolution of the Orchidaceae and the Utility of Plastomic Mutational Hotspots
出版年份 2017 全文链接
标题
The Complete Plastome Sequences of Four Orchid Species: Insights into the Evolution of the Orchidaceae and the Utility of Plastomic Mutational Hotspots
作者
关键词
-
出版物
Frontiers in Plant Science
Volume 8, Issue -, Pages -
出版商
Frontiers Media SA
发表日期
2017-05-03
DOI
10.3389/fpls.2017.00715
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Tricin-lignins: occurrence and quantitation of tricin in relation to phylogeny
- (2016) Wu Lan et al. PLANT JOURNAL
- Exceptional reduction of the plastid genome of saguaro cactus (Carnegiea gigantea): Loss of the ndh gene suite and inverted repeat
- (2015) M. J. Sanderson et al. AMERICAN JOURNAL OF BOTANY
- Phylogenetic relationships in Epidendroideae (Orchidaceae), one of the great flowering plant radiations: progressive specialization and diversification
- (2015) John V. Freudenstein et al. ANNALS OF BOTANY
- NDH expression marks major transitions in plant evolution and reveals coordinate intracellular gene loss
- (2015) Tracey A Ruhlman et al. BMC PLANT BIOLOGY
- Mutation Rates in Plastid Genomes: They Are Lower than You Might Think
- (2015) David Roy Smith Genome Biology and Evolution
- Evolutionary Stasis in Cycad Plastomes and the First Case of Plastome GC-Biased Gene Conversion
- (2015) Chung-Shien Wu et al. Genome Biology and Evolution
- Orchid phylogenomics and multiple drivers of their extraordinary diversification
- (2015) Thomas J. Givnish et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- A Comparative Analysis of Whole Plastid Genomes from the Apiales: Expansion and Contraction of the Inverted Repeat, Mitochondrial to Plastid Transfer of DNA, and Identification of Highly Divergent Noncoding Regions
- (2015) Stephen R. Downie et al. SYSTEMATIC BOTANY
- Complete chloroplast and ribosomal sequences for 30 accessions elucidate evolution of Oryza AA genome species
- (2015) Kyunghee Kim et al. Scientific Reports
- The location and translocation of ndh genes of chloroplast origin in the Orchidaceae family
- (2015) Choun-Sea Lin et al. Scientific Reports
- Seven New Complete Plastome Sequences Reveal Rampant Independent Loss of the ndh Gene Family across Orchids and Associated Instability of the Inverted Repeat/Small Single-Copy Region Boundaries
- (2015) Hyoung Tae Kim et al. PLoS One
- Chloroplast DNA sequence utility for the lowest phylogenetic and phylogeographic inferences in angiosperms: The tortoise and the hare IV
- (2014) Joey Shaw et al. AMERICAN JOURNAL OF BOTANY
- RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
- (2014) Alexandros Stamatakis BIOINFORMATICS
- Ancient Nuclear Plastid DNA in the Yew Family (Taxaceae)
- (2014) C.-Y. Hsu et al. Genome Biology and Evolution
- Comparative Chloroplast Genomes of Photosynthetic Orchids: Insights into Evolution of the Orchidaceae and Development of Molecular Markers for Phylogenetic Applications
- (2014) Jing Luo et al. PLoS One
- Complete chloroplast genome of the genus Cymbidium: lights into the species identification, phylogenetic implications and population genetic analyses
- (2013) Jun-Bo Yang et al. BMC EVOLUTIONARY BIOLOGY
- Chloroplast Phylogenomics Indicates that Ginkgo biloba Is Sister to Cycads
- (2013) Chung-Shien Wu et al. Genome Biology and Evolution
- Identification of chloroplast genome loci suitable for high-resolution phylogeographic studies ofColocasia esculenta(L.) Schott (Araceae) and closely related taxa
- (2013) Ibrar Ahmed et al. Molecular Ecology Resources
- OrchidBase 2.0: Comprehensive Collection of Orchidaceae Floral Transcriptomes
- (2013) Wen-Chieh Tsai et al. PLANT AND CELL PHYSIOLOGY
- Orchidstra: An Integrated Orchid Functional Genomics Database
- (2013) Chun-lin Su et al. PLANT AND CELL PHYSIOLOGY
- The Plastid Genome of Najas flexilis: Adaptation to Submersed Environments Is Accompanied by the Complete Loss of the NDH Complex in an Aquatic Angiosperm
- (2013) Elena L. Peredo et al. PLoS One
- The plastid genome of the mycoheterotrophic Corallorhiza striata (Orchidaceae) is in the relatively early stages of degradation
- (2012) Craig F. Barrett et al. AMERICAN JOURNAL OF BOTANY
- PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses
- (2012) R. Lanfear et al. MOLECULAR BIOLOGY AND EVOLUTION
- The comparative chloroplast genomic analysis of photosynthetic orchids and developing DNA markers to distinguish Phalaenopsis orchids
- (2012) Cheng-Fong Jheng et al. PLANT SCIENCE
- Complete Chloroplast Genome Sequence of an Orchid Model Plant Candidate: Erycina pusilla Apply in Tropical Oncidium Breeding
- (2012) I-Chun Pan et al. PLoS One
- Evaluating Methods for Isolating Total RNA and Predicting the Success of Sequencing Phylogenetically Diverse Plant Transcriptomes
- (2012) Marc T. J. Johnson et al. PLoS One
- The Evolutionary Root of Flowering Plants
- (2012) Vadim V. Goremykin et al. SYSTEMATIC BIOLOGY
- MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space
- (2012) Fredrik Ronquist et al. SYSTEMATIC BIOLOGY
- Loss of Different Inverted Repeat Copies from the Chloroplast Genomes of Pinaceae and Cupressophytes and Influence of Heterotachy on the Evaluation of Gymnosperm Phylogeny
- (2011) Chung-Shien Wu et al. Genome Biology and Evolution
- Systematic Error in Seed Plant Phylogenomics
- (2011) Bojian Zhong et al. Genome Biology and Evolution
- Sequencing and Analysis of Plastid Genome in Mycoheterotrophic Orchid Neottia nidus-avis
- (2011) Maria D. Logacheva et al. Genome Biology and Evolution
- Rampant Gene Loss in the Underground Orchid Rhizanthella gardneri Highlights Evolutionary Constraints on Plastid Genomes
- (2011) E. Delannoy et al. MOLECULAR BIOLOGY AND EVOLUTION
- Complete chloroplast genome of Oncidium Gower Ramsey and evaluation of molecular markers for identification and breeding in Oncidiinae
- (2010) Fu-Hui Wu et al. BMC PLANT BIOLOGY
- SequenceMatrix: concatenation software for the fast assembly of multi-gene datasets with character set and codon information
- (2010) Gaurav Vaidya et al. CLADISTICS
- Comparative Chloroplast Genomics Reveals the Evolution of Pinaceae Genera and Subfamilies
- (2010) Ching-Ping Lin et al. Genome Biology and Evolution
- Phylogenetic relationships within Orchidaceae based on a low-copy nuclear coding gene, Xdh: Congruence with organellar and nuclear ribosomal DNA results
- (2010) Marcin Górniak et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Chloroplast genome sequences from total DNA for plant identification
- (2010) Catherine J. Nock et al. PLANT BIOTECHNOLOGY JOURNAL
- Plastid ndh genes in plant evolution
- (2010) Mercedes Martín et al. PLANT PHYSIOLOGY AND BIOCHEMISTRY
- Phylogenetic analysis of 83 plastid genes further resolves the early diversification of eudicots
- (2010) M. J. Moore et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
- (2009) P. Librado et al. BIOINFORMATICS
- Loss of all plastid ndh genes in Gnetales and conifers: extent and evolutionary significance for the seed plant phylogeny
- (2009) Thomas Werner Anthony Braukmann et al. CURRENT GENETICS
- Evolution of reduced and compact chloroplast genomes (cpDNAs) in gnetophytes: Selection toward a lower-cost strategy
- (2009) Chung-Shien Wu et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Dynamics and evolution of the inverted repeat-large single copy junctions in the chloroplast genomes of monocots
- (2008) Rui-Jiang Wang et al. BMC EVOLUTIONARY BIOLOGY
- Relative rates of synonymous substitutions in the mitochondrial, chloroplast and nuclear genomes of seed plants
- (2008) G DROUIN et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Phylogenetic utility of ycf1 in orchids: a plastid gene more variable than matK
- (2008) Kurt M. Neubig et al. PLANT SYSTEMATICS AND EVOLUTION
- DNA barcoding the floras of biodiversity hotspots
- (2008) R. Lahaye et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started