The complete chloroplast genome sequence ofGentiana lawrenceivar. farreri(Gentianaceae) and comparative analysis with its congeneric species

The complete chloroplast genome of Gentiana straminea (Gentianaceae), an endemic species to the Sino-Himalayan subregion

(2016) Lianghong Ni et al.   GENE

Integration of complete chloroplast genome sequences with small amplicon datasets improves phylogenetic resolution in Acacia

(2016) Anna V. Williams et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Sources of inversion variation in the small single copy (SSC) region of chloroplast genomes

(2015) Joseph F. Walker et al.   AMERICAN JOURNAL OF BOTANY

Comparative analysis of microsatellites in chloroplast genomes of lower and higher plants

(2015) Biju George et al.   CURRENT GENETICS

A Phylogenetic Analysis of 34 Chloroplast Genomes Elucidates the Relationships between Wild and Domestic Species within the GenusCitrus

(2015) Jose Carbonell-Caballero et al.   MOLECULAR BIOLOGY AND EVOLUTION

Complete Chloroplast Genome Sequence of Tartary Buckwheat (Fagopyrum tataricum) and Comparative Analysis with Common Buckwheat (F. esculentum)

(2015) Kwang-Soo Cho et al.   PLoS One

Comparative analysis of complete chloroplast genome sequence and inversion variation in Lasthenia burkei (Madieae, Asteraceae)

(2014) Joseph F. Walker et al.   AMERICAN JOURNAL OF BOTANY

Phylogenetic Analysis of 47 Chloroplast Genomes Clarifies the Contribution of Wild Species to the Domesticated Apple Maternal Line

(2013) Svetlana V. Nikiforova et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Complete Chloroplast Genome Sequence of the Medicinal Plant Salvia miltiorrhiza

(2013) Jun Qian et al.   PLoS One

Complete Chloroplast Genome Sequences of Mongolia Medicine Artemisia frigida and Phylogenetic Relationships with Other Plants

(2013) Yue Liu et al.   PLoS One

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

Plastid ndh genes in plant evolution

(2010) Mercedes Martín et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

(2009) P. Librado et al.   BIOINFORMATICS

Genetic relationships in the genus Gentiana based on chloroplast DNA sequence data and nuclear DNA content

(2009) Kei-ichiro Mishiba et al.   BREEDING SCIENCE

Dynamics and evolution of the inverted repeat-large single copy junctions in the chloroplast genomes of monocots

(2008) Rui-Jiang Wang et al.   BMC EVOLUTIONARY BIOLOGY

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

jModelTest: Phylogenetic Model Averaging

(2008) D. Posada   MOLECULAR BIOLOGY AND EVOLUTION