Probing the competition between duplex and G-quadruplex/i-motif structures using a conformation-sensitive fluorescent nucleoside probe

Evaluation of the Stability of DNA i-Motifs in the Nuclei of Living Mammalian Cells

(2018) Simon Dzatko et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

4n–1 Is a “Sweet Spot” in DNA i-Motif Folding of 2′-Deoxycytidine Homopolymers

(2017) Aaron M. Fleming et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Characterization of human telomere RNA G-quadruplex structures in vitro and in living cells using 19F NMR spectroscopy

(2017) Hong-Liang Bao et al.   NUCLEIC ACIDS RESEARCH

2′-Fluoroarabinonucleic acid modification traps G-quadruplex and i-motif structures in human telomeric DNA

(2017) Hala Abou Assi et al.   NUCLEIC ACIDS RESEARCH

Mutually Exclusive Formation of G-Quadruplex and i-Motif Is a General Phenomenon Governed by Steric Hindrance in Duplex DNA

(2016) Yunxi Cui et al.   BIOCHEMISTRY

Quadruplex Nucleic Acids as Novel Therapeutic Targets

(2016) Stephen Neidle   JOURNAL OF MEDICINAL CHEMISTRY

Small Molecule-Based Pattern Recognition To Classify RNA Structure

(2016) Christopher S. Eubanks et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Mitoxantrone and Analogues Bind and Stabilize i-Motif Forming DNA Sequences

(2016) Elisé P. Wright et al.   Scientific Reports

Positional Impact of Fluorescently Modified G-Tetrads within Polymorphic Human Telomeric G-Quadruplex Structures

(2015) Michael Sproviero et al.   ACS Chemical Biology

Single-Molecule Manipulation of the Duplex Formation and Dissociation at the G-Quadruplex/i-Motif Site in the DNA Nanostructure

(2015) Masayuki Endo et al.   ACS Nano

Assessment of selectivity of G-quadruplex ligands via an optimised FRET melting assay

(2015) Aurore De Rache et al.   BIOCHIMIE

Tuning the pH Response of i-Motif DNA Oligonucleotides

(2015) Laurie Lannes et al.   CHEMBIOCHEM

Probing structural changes of self assembled i-motif DNA

(2015) Il Joon Lee et al.   CHEMICAL COMMUNICATIONS

Visualization of RNA-Quadruplexes in Live Cells

(2015) Aurélien Laguerre et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Fluorescent Probe for Proton-Coupled DNA Folding Revealing Slow Exchange of i-Motif and Duplex Structures

(2015) Guillaume Mata et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Conformation-sensitive nucleoside analogues as topology-specific fluorescence turn-on probes for DNA and RNA G-quadruplexes

(2015) Arun A. Tanpure et al.   NUCLEIC ACIDS RESEARCH

DNA Nanotechnology Based on i-Motif Structures

(2014) Yuanchen Dong et al.   ACCOUNTS OF CHEMICAL RESEARCH

i-Motif DNA: Structure, stability and targeting with ligands

(2014) Henry A. Day et al.   BIOORGANIC & MEDICINAL CHEMISTRY

Controlling the Fluorescence of Benzofuran-Modified Uracil Residues in Oligonucleotides by Triple-Helix Formation

(2014) Takashi Kanamori et al.   CHEMBIOCHEM

The Dynamic Character of the BCL2 Promoter i-Motif Provides a Mechanism for Modulation of Gene Expression by Compounds That Bind Selectively to the Alternative DNA Hairpin Structure

(2014) Samantha Kendrick et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

The Transcriptional Complex Between the BCL2 i-Motif and hnRNP LL Is a Molecular Switch for Control of Gene Expression That Can Be Modulated by Small Molecules

(2014) Hyun-Jin Kang et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Combination of i-Motif and G-Quadruplex Structures within the Same Strand: Formation and Application

(2013) Jun Zhou et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Efficient Electron Transfer in i-Motif DNA with a Tetraplex Structure

(2013) Jungkweon Choi et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Fluorescent Probes for G-Quadruplex Structures

(2013) Balayeshwanth R. Vummidi et al.   CHEMBIOCHEM

Fluorescence modification of the AAAA (4A) loop: toward a probe of the structural dynamics of the i-motif of the retinoblastoma gene

(2013) Jung Woo Park et al.   CHEMICAL COMMUNICATIONS

Environment-Responsive Fluorescent Nucleoside Analogue Probe for Studying Oligonucleotide Dynamics in a Model Cell-like Compartment

(2013) Maroti G. Pawar et al.   JOURNAL OF PHYSICAL CHEMISTRY B

I-Motif-Programmed Functionalization of DNA Nanocircles

(2013) Tao Li et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Two DNA nanomachines map pH changes along intersecting endocytic pathways inside the same cell

(2013) Souvik Modi et al.   Nature Nanotechnology

Detection of G-quadruplex DNA in mammalian cells

(2013) A. Henderson et al.   NUCLEIC ACIDS RESEARCH

DNSC: a fluorescent, environmentally sensitive cytidine derivative for the direct detection of GGG triad sequences

(2013) Ki Tae Kim et al.   ORGANIC & BIOMOLECULAR CHEMISTRY

G-quadruplex structures are stable and detectable in human genomic DNA

(2013) Enid Yi Ni Lam et al.   Nature Communications

Synthesis and Photophysical Characterisation of a Fluorescent Nucleoside Analogue that Signals the Presence of an Abasic Site in RNA

(2012) Arun A. Tanpure et al.   CHEMBIOCHEM

I-Motif formation in gene promoters: unusually stable formation in sequences complementary to known G-quadruplexes

(2012) John A. Brazier et al.   CHEMICAL COMMUNICATIONS

An Intramolecular G-Quadruplex Structure Is Required for Binding of Telomeric Repeat-Containing RNA to the Telomeric Protein TRF2

(2012) Giulia Biffi et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Circular dichroism and guanine quadruplexes

(2012) Michaela Vorlíčková et al.   METHODS

NMR spectroscopy of G-quadruplexes

(2012) Michael Adrian et al.   METHODS

Contribution of the first K-homology domain of poly(C)-binding protein 1 to its affinity and specificity for C-rich oligonucleotides

(2012) Y. M. K. Yoga et al.   NUCLEIC ACIDS RESEARCH

Quadruplex formation as a molecular switch to turn on intrinsically fluorescent nucleotide analogs

(2012) John Johnson et al.   NUCLEIC ACIDS RESEARCH

Insights into the biomedical effects of carboxylated single-wall carbon nanotubes on telomerase and telomeres

(2012) Yong Chen et al.   Nature Communications

8-Vinyl-2′-deoxyguanosine as a Fluorescent 2′-Deoxyguanosine Mimic for Investigating DNA Hybridization and Topology

(2011) André Nadler et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Time-Resolved NMR Spectroscopic Studies of DNA i-Motif Folding Reveal Kinetic Partitioning

(2011) Anna Lena Lieblein et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Nucleic Acid Based Molecular Devices

(2011) Yamuna Krishnan et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Heterogeneous Nuclear Ribonucleoprotein K and Nucleolin as Transcriptional Activators of the Vascular Endothelial Growth Factor Promoter through Interaction with Secondary DNA Structures

(2011) Diana J. Uribe et al.   BIOCHEMISTRY

Monitoring i-motif transitions through the exciplex emission of a fluorescent probe incorporating two PyA units

(2011) Il Joon Lee et al.   CHEMICAL COMMUNICATIONS

The application of DNA and RNA G-quadruplexes to therapeutic medicines

(2011) Gavin W. Collie et al.   CHEMICAL SOCIETY REVIEWS

A Microenvironment-Sensitive Fluorescent Pyrimidine Ribonucleoside Analogue: Synthesis, Enzymatic Incorporation, and Fluorescence Detection of a DNA Abasic Site

(2011) Arun A. Tanpure et al.   CHEMISTRY-A EUROPEAN JOURNAL

Targeting G-quadruplexes in gene promoters: a novel anticancer strategy?

(2011) Shankar Balasubramanian et al.   NATURE REVIEWS DRUG DISCOVERY

Highly fluorescent guanosine mimics for folding and energy transfer studies

(2011) Anaëlle Dumas et al.   NUCLEIC ACIDS RESEARCH

Molecular crowding of the cosolutes induces an intramolecular i-motif structure of triplet repeat DNA oligomers at neutral pH

(2010) Arivazhagan Rajendran et al.   CHEMICAL COMMUNICATIONS

Making sense of G-quadruplex and i-motif functions in oncogene promoters

(2010) Tracy A. Brooks et al.   FEBS Journal

Telomeric repeat-containing RNA structure in living cells

(2010) Y. Xu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Characterization of a K+-Induced Conformational Switch in a Human Telomeric DNA Oligonucleotide Using 2-Aminopurine Fluorescence

(2009) Robert D. Gray et al.   BIOCHEMISTRY

Probe for i-motif structure and G-rich strands using end-stacking ability

(2009) Il Joon Lee et al.   CHEMICAL COMMUNICATIONS

Effect of flanking bases on quadruplex stability and Watson-Crick duplex competition

(2009) Amit Arora et al.   FEBS Journal

The Importance of Negative Superhelicity in Inducing the Formation of G-Quadruplex and i-Motif Structures in the c-Myc Promoter: Implications for Drug Targeting and Control of Gene Expression

(2009) Daekyu Sun et al.   JOURNAL OF MEDICINAL CHEMISTRY

The i-Motif in thebcl-2P1 Promoter Forms an Unexpectedly Stable Structure with a Unique 8:5:7 Loop Folding Pattern

(2009) Samantha Kendrick et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

The effect of the TRF2 N-terminal and TRFH regions on telomeric G-quadruplex structures

(2009) Ilene M. Pedroso et al.   NUCLEIC ACIDS RESEARCH

Kinetic hybrid i-motifs: Intercepting DNA with RNA to form a DNA2–RNA2 i-motif

(2008) Saikat Chakraborty et al.   BIOCHIMIE