Nucleic Acid Based Molecular Devices

Applications of Aptamers as Sensors

(2010) Eun Jeong Cho et al.   Annual Review of Analytical Chemistry

DNA Scissors Device Used to Measure MutS Binding to DNA Mis-pairs

(2010) Hongzhou Gu et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Molecular robots guided by prescriptive landscapes

(2010) Kyle Lund et al.   NATURE

A proximity-based programmable DNA nanoscale assembly line

(2010) Hongzhou Gu et al.   NATURE

Enhancement of Aptamer Microarray Sensitivity through Spacer Optimization and Avidity Effect

(2009) Yeh-Hsing Lao et al.   ANALYTICAL CHEMISTRY

Using Aptamer-Conjugated Fluorescence Resonance Energy Transfer Nanoparticles for Multiplexed Cancer Cell Monitoring

(2009) Xiaolan Chen et al.   ANALYTICAL CHEMISTRY

Triggered Release of an Active Peptide Conjugate from a DNA Device by an Orally Administrable Small Molecule

(2009) Steven K. Taylor et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Click Chemistry for the Identification of G-Quadruplex Structures: Discovery of a DNA-RNA G-Quadruplex

(2009) Yan Xu et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Coherent Activation of DNA Tweezers: A “SET-RESET” Logic System

(2009) Johann Elbaz et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

A Light-Driven Supramolecular Optical Switch

(2009) Shin-nosuke Uno et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

The Chemical Biology of Aptamers

(2009) Günter Mayer   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Icosahedral DNA Nanocapsules by Modular Assembly

(2009) Dhiraj Bhatia et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Self-Contained Photonically-Controlled DNA Tweezers

(2009) Yusuke Ogura et al.   Applied Physics Express

DNA and RNA-Controlled Switching of Protein Kinase Activity

(2009) Lars Röglin et al.   CHEMBIOCHEM

Switchable redox activity by proton fuelled DNA nano-machines

(2009) Su Ryon Shin et al.   CHEMICAL COMMUNICATIONS

A pH-driven, reconfigurable DNA nanotriangle

(2009) Wenxing Wang et al.   CHEMICAL COMMUNICATIONS

Functional Nucleic Acid Sensors

(2009) Juewen Liu et al.   CHEMICAL REVIEWS

Processive Motion of Bipedal DNA Walkers

(2009) Friedrich C. Simmel   CHEMPHYSCHEM

Persistence length and scaling properties of single-stranded DNA adsorbed on modified graphite

(2009) Kristian Rechendorff et al.   JOURNAL OF CHEMICAL PHYSICS

Stabilization of Three-Way Junctions of DNA under Molecular Crowding Conditions

(2009) Sanjukta Muhuri et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

A Yoctoliter-Scale DNA Reactor for Small-Molecule Evolution

(2009) Margit Haahr Hansen et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

MNAzymes, a Versatile New Class of Nucleic Acid Enzymes That Can Function as Biosensors and Molecular Switches

(2009) Elisa Mokany et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Single-DNA Molecule Nanomotor Regulated by Photons

(2009) Huaizhi Kang et al.   NANO LETTERS

Reciprocal DNA Nanomechanical Devices Controlled by the Same Set Strands

(2009) Chunhua Liu et al.   NANO LETTERS

Self-assembly of DNA into nanoscale three-dimensional shapes

(2009) Shawn M. Douglas et al.   NATURE

From molecular to macroscopic via the rational design of a self-assembled 3D DNA crystal

(2009) Jianping Zheng et al.   NATURE

Self-assembly of a nanoscale DNA box with a controllable lid

(2009) Ebbe S. Andersen et al.   NATURE

Dynamic patterning programmed by DNA tiles captured on a DNA origami substrate

(2009) Hongzhou Gu et al.   Nature Nanotechnology

A DNA nanomachine that maps spatial and temporal pH changes inside living cells

(2009) Souvik Modi et al.   Nature Nanotechnology

Enzyme cascades activated on topologically programmed DNA scaffolds

(2009) Ofer I. Wilner et al.   Nature Nanotechnology

The poly dA helix: a new structural motif for high performance DNA-based molecular switches

(2009) Saikat Chakraborty et al.   NUCLEIC ACIDS RESEARCH

Selection, characterization and application of new RNA HIV gp 120 aptamers for facile delivery of Dicer substrate siRNAs into HIV infected cells

(2009) Jiehua Zhou et al.   NUCLEIC ACIDS RESEARCH

Therapeutic Applications of DNA and RNA Aptamers

(2009) Kristina W. Thiel et al.   OLIGONUCLEOTIDES

Hybridization kinetics is different inside cells

(2009) I. Schoen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An information-bearing seed for nucleating algorithmic self-assembly

(2009) R. D. Barish et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Bipedal DNA Brownian Motor with Coordinated Legs

(2009) Tosan Omabegho et al.   SCIENCE

Control of Self-Assembly of DNA Tubules Through Integration of Gold Nanoparticles

(2009) J. Sharma et al.   SCIENCE

Mechanism for a Directional, Processive, and Reversible DNA Motor

(2009) Jonathan Bath et al.   Small

G-quadruplex structures: in vivo evidence and function

(2009) Hans J. Lipps et al.   TRENDS IN CELL BIOLOGY

Label-Free Colorimetric Detection of Lead Ions with a Nanomolar Detection Limit and Tunable Dynamic Range by using Gold Nanoparticles and DNAzyme

(2008) Zidong Wang et al.   ADVANCED MATERIALS

Cancer Cell Targeting Using Multiple Aptamers Conjugated on Nanorods

(2008) Yu-Fen Huang et al.   ANALYTICAL CHEMISTRY

Systematic Investigation of Optimal Aptamer Immobilization for Protein−Microarray Applications

(2008) Johanna-Gabriela Walter et al.   ANALYTICAL CHEMISTRY

Three-Dimensional Nanoconstruction with DNA

(2008) Friedrich C. Simmel   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

A Metal-Mediated Conformational Switch Controls G-Quadruplex Binding Affinity

(2008) David Monchaud et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

A Contractile DNA Machine

(2008) Daniel Lubrich et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Enrichment of Cell‐Targeting and Population‐Specific Aptamers by Fluorescence‐Activated Cell Sorting

(2008) Marie‐Sophie L. Raddatz et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Self-Assembly of a DNA Dodecahedron from 20 Trisoligonucleotides withC3h Linkers

(2008) Jan Zimmermann et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Regulation of Telomerase Activity by the Thermodynamic Stability of a DNA⋅RNA Hybrid

(2008) Hai-Qing Yu et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Molecular Engineering of DNA: Molecular Beacons

(2008) Kemin Wang et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Structural Principles From Large RNAs

(2008) Stephen R. Holbrook   Annual Review of Biophysics

DNA-directed assembly of artificial multienzyme complexes

(2008) Joachim Müller et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Selective Recognition of a DNA G-Quadruplex by an Engineered Antibody†

(2008) Himesh Fernando et al.   BIOCHEMISTRY

Kinetic hybrid i-motifs: Intercepting DNA with RNA to form a DNA2–RNA2 i-motif

(2008) Saikat Chakraborty et al.   BIOCHIMIE

Molecular crowding effects on structure and stability of DNA

(2008) Daisuke Miyoshi et al.   BIOCHIMIE

DNA Nanotubes as Combinatorial Vehicles for Cellular Delivery

(2008) SeungHyeon Ko et al.   BIOMACROMOLECULES

Reversible electronic nanoswitch based on DNA G-quadruplex conformation: A platform for single-step, reagentless potassium detection

(2008) Zai-Sheng Wu et al.   BIOMATERIALS

A DNA Nanomachine Powered by Light Irradiation

(2008) Xingguo Liang et al.   CHEMBIOCHEM

A simple and sensitive colorimetric pH meter based on DNA conformational switch and gold nanoparticle aggregation

(2008) Cuie Chen et al.   CHEMICAL COMMUNICATIONS

Catalytic DNA (deoxyribozymes) for synthetic applications—current abilities and future prospects

(2008) Scott K. Silverman   CHEMICAL COMMUNICATIONS

DNAzymes for sensing, nanobiotechnology and logic gate applications

(2008) Itamar Willner et al.   CHEMICAL SOCIETY REVIEWS

Assembling OX40 Aptamers on a Molecular Scaffold to Create a Receptor-Activating Aptamer

(2008) Claudia M. Dollins et al.   CHEMISTRY & BIOLOGY

Combining G-Quadruplex Targeting Motifs on a Single Peptide Nucleic Acid Scaffold: A Hybrid (3+1) PNA-DNA Bimolecular Quadruplex

(2008) Alexis Paul et al.   CHEMISTRY-A EUROPEAN JOURNAL

Molecular imaging with nanoparticles: giant roles for dwarf actors

(2008) Paul Debbage et al.   HISTOCHEMISTRY AND CELL BIOLOGY

Multivalent 4-1BB binding aptamers costimulate CD8+ T cells and inhibit tumor growth in mice

(2008) James O. McNamara et al.   JOURNAL OF CLINICAL INVESTIGATION

Photo-pH Dually Modulated Fluorescence Switch Based on DNA Spatial Nanodevice

(2008) Huajie Liu et al.   JOURNAL OF PHYSICAL CHEMISTRY B

DNA-Small Molecule Chimera with Responsive Protein-Binding Ability

(2008) D. Calvin Harris et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Gating of Single Synthetic Nanopores by Proton-Driven DNA Molecular Motors

(2008) Fan Xia et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Novel Dual Inhibitory Function Aptamer–siRNA Delivery System for HIV-1 Therapy

(2008) Jiehua Zhou et al.   MOLECULAR THERAPY

A DNA Nanotransport Device Powered by Polymerase ϕ29

(2008) Sudheer Sahu et al.   NANO LETTERS

The use of gold nanoparticle aggregation for DNA computing and logic-based biomolecular detection

(2008) In-Hee Lee et al.   NANOTECHNOLOGY

Hierarchical self-assembly of DNA into symmetric supramolecular polyhedra

(2008) Yu He et al.   NATURE

Programming biomolecular self-assembly pathways

(2008) Peng Yin et al.   NATURE

Reconfigurable, braced, three-dimensional DNA nanostructures

(2008) Russell P. Goodman et al.   Nature Nanotechnology

DNAzyme-mediated catalysis with only guanosine and cytidine nucleotides

(2008) Kenny Schlosser et al.   NUCLEIC ACIDS RESEARCH

Phototoxic aptamers selectively enter and kill epithelial cancer cells

(2008) Cátia S. M. Ferreira et al.   NUCLEIC ACIDS RESEARCH

Coordinated Chemomechanical Cycles: A Mechanism for Autonomous Molecular Motion

(2008) S. J. Green et al.   PHYSICAL REVIEW LETTERS

A DNA-based nanomechanical device with three robust states

(2008) B. Chakraborty et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Aptamer-based endocytosis of a lysosomal enzyme

(2008) C.-h. B. Chen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Selection and characterization of anti-NF- B p65 RNA aptamers

(2008) S. E. Wurster et al.   RNA

Higher-Order Cellular Information Processing with Synthetic RNA Devices

(2008) M. N. Win et al.   SCIENCE

Recent Progress in Nucleic Acid Aptamer-Based Biosensors and Bioassays

(2008) Wendy Mok et al.   SENSORS

pH-Induced Reversible Expansion/Contraction of Gold Nanoparticle Aggregates

(2008) Yi Chen et al.   Small

Capture and Release of Protein by a Reversible DNA-Induced Sol–Gel Transition System

(2007) Bryan Wei et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

The RNA2–PNA2hybrid i-motif—a novel RNA-based building block

(2007) Saikat Chakraborty et al.   CHEMICAL COMMUNICATIONS

Cell Specific Aptamer–Photosensitizer Conjugates as a Molecular Tool in Photodynamic Therapy

(2007) Prabodhika Mallikaratchy et al.   ChemMedChem

A hitchhiker's guide to G-quadruplex ligands

(2007) David Monchaud et al.   ORGANIC & BIOMOLECULAR CHEMISTRY