Sorting specimen-rich invertebrate samples with cost-effective NGS barcodes: Validating a reverse workflow for specimen processing

Random sampling causes the low reproducibility of rare eukaryotic OTUs in Illumina COI metabarcoding

(2017) Matthieu Leray et al.   PeerJ

Fecal metagenomics for the simultaneous assessment of diet, parasites, and population genetics of an understudied primate

(2016) Amrita Srivathsan et al.   Frontiers in Zoology

Advancing taxonomy and bioinventories with DNA barcodes

(2016) Scott E. Miller et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Counting animal species with DNA barcodes: Canadian insects

(2016) Paul D. N. Hebert et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Fast Census of Moth Diversity in the Neotropics: A Comparison of Field-Assigned Morphospecies and DNA Barcoding in Tiger Moths

(2016) Mauricio M. Zenker et al.   PLoS One

Rarity and Incomplete Sampling in DNA-Based Species Delimitation

(2016) Dirk Ahrens et al.   SYSTEMATIC BIOLOGY

Citation of taxonomic publications: the why, when, what and what not

(2016) RUDOLF MEIER   SYSTEMATIC ENTOMOLOGY

Uncovering species boundaries in the Neotropical ant complexEctatomma ruidum(Ectatomminae) under the presence of nuclear mitochondrial paralogues

(2016) Reina Gabriela Aguilar-Velasco et al.   ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Investigating suburban micromoth diversity using DNA barcoding of malaise trap samples

(2016) Kaare Aagaard et al.   URBAN ECOSYSTEMS

Next-generation freshwater bioassessment: eDNA metabarcoding with a conserved metazoan primer reveals species-rich and reservoir-specific communities

(2016) Nicholas K. M. Lim et al.   Royal Society Open Science

Species Identification in Malaise Trap Samples by DNA Barcoding Based on NGS Technologies and a Scoring Matrix

(2016) Jérôme Morinière et al.   PLoS One

$1 DNA barcodes for reconstructing complex phenomes and finding rare species in specimen-rich samples

(2015) Rudolf Meier et al.   CLADISTICS

Soup to Tree: The Phylogeny of Beetles Inferred by Mitochondrial Metagenomics of a Bornean Rainforest Sample

(2015) Alex Crampton-Platt et al.   MOLECULAR BIOLOGY AND EVOLUTION

Trace DNA from insect skins: a comparison of five extraction protocols and direct PCR on chironomid pupal exuviae

(2015) Petra Kranzfelder et al.   Molecular Ecology Resources

DNA barcoding and minibarcoding as a powerful tool for feather mite studies

(2015) Jorge Doña et al.   Molecular Ecology Resources

Validating the power of mitochondrial metagenomics for community ecology and phylogenetics of complex assemblages

(2015) Carola Gómez-Rodríguez et al.   Methods in Ecology and Evolution

Could pseudogenes be widespread in ants? Evidence of numts in the leafcutter ant Acromyrmex striatus (Roger, 1863) (Formicidae: Attini)

(2014) Maykon Passos Cristiano et al.   COMPTES RENDUS BIOLOGIES

Admixture and the organization of genetic diversity in a butterfly species complex revealed through common and rare genetic variants

(2014) Zachariah Gompert et al.   MOLECULAR ECOLOGY

‘Direct PCR’ optimization yields a rapid, cost-effective, nondestructive and efficient method for obtaining DNA barcodes without DNA extraction

(2014) Wing Hing Wong et al.   Molecular Ecology Resources

Comparing the effectiveness of metagenomics and metabarcoding for diet analysis of a leaf-feeding monkey (Pygathrix nemaeus)

(2014) Amrita Srivathsan et al.   Molecular Ecology Resources

Then there were five: a reexamination of the ant genus Paratrechina (Hymenoptera, Formicidae)

(2014) John LaPolla et al.   ZooKeys

PEAR: a fast and accurate Illumina Paired-End reAd mergeR

(2013) J. Zhang et al.   BIOINFORMATICS

Reliable, verifiable and efficient monitoring of biodiversity via metabarcoding

(2013) Yinqiu Ji et al.   ECOLOGY LETTERS

A new versatile primer set targeting a short fragment of the mitochondrial COI region for metabarcoding metazoan diversity: application for characterizing coral reef fish gut contents

(2013) Matthieu Leray et al.   Frontiers in Zoology

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Redesign of PCR primers for mitochondrial cytochromecoxidase subunit I for marine invertebrates and application in all-taxa biotic surveys

(2013) J. Geller et al.   Molecular Ecology Resources

A plea for digital reference collections and other science-based digitization initiatives in taxonomy: Sepsidnet as exemplar

(2013) YUCHEN ANG et al.   SYSTEMATIC ENTOMOLOGY

An update on DNA barcoding: low species coverage and numerous unidentified sequences

(2012) Shiyang Kwong et al.   CLADISTICS

High species turnover of the ant genus Solenopsis (Hymenoptera : Formicidae) along an altitudinal gradient in the Ecuadorian Andes, indicated by a combined DNA sequencing and morphological approach

(2012) Thibaut Delsinne et al.   INVERTEBRATE SYSTEMATICS

PCR inhibitors - occurrence, properties and removal

(2012) C. Schrader et al.   JOURNAL OF APPLIED MICROBIOLOGY

GenBank

(2012) Dennis A. Benson et al.   NUCLEIC ACIDS RESEARCH

DNA Barcoding for Community Ecology - How to Tackle a Hyperdiverse, Mostly Undescribed Melanesian Fauna

(2012) Rene Tänzler et al.   PLoS One

DNA Barcoding of Recently Diverged Species: Relative Performance of Matching Methods

(2012) Robin van Velzen et al.   PLoS One

The Effect of Geographical Scale of Sampling on DNA Barcoding

(2012) J. Bergsten et al.   SYSTEMATIC BIOLOGY

Biodiversity soup: metabarcoding of arthropods for rapid biodiversity assessment and biomonitoring

(2012) Douglas W. Yu et al.   Methods in Ecology and Evolution

Assessing biodiversity of a freshwater benthic macroinvertebrate community through non-destructive environmental barcoding of DNA from preservative ethanol

(2012) Mehrdad Hajibabaei et al.   BMC ECOLOGY

DNA barcoding of Northern Nearctic Muscidae (Diptera) reveals high correspondence between morphological and molecular species limits

(2012) Anaïs K Renaud et al.   BMC ECOLOGY

On the inappropriate use of Kimura-2-parameter (K2P) divergences in the DNA-barcoding literature

(2011) Amrita Srivathsan et al.   CLADISTICS

ABGD, Automatic Barcode Gap Discovery for primary species delimitation

(2011) N. PUILLANDRE et al.   MOLECULAR ECOLOGY

Is the COI barcoding gene involved in speciation through intergenomic conflict?

(2011) Shiyang Kwong et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Evolution of the Neotropical ant genusLinepithema

(2009) ALEXANDER L. WILD   SYSTEMATIC ENTOMOLOGY

Error Cascades in the Biological Sciences: The Unwanted Consequences of Using Bad Taxonomy in Ecology

(2008) Alejandro Bortolus   AMBIO

Occurrence and structural organization of the exocrine glands in the legs of ants

(2008) Johan Billen   ARTHROPOD STRUCTURE & DEVELOPMENT

A universal DNA mini-barcode for biodiversity analysis

(2008) Isabelle Meusnier et al.   BMC GENOMICS

Many species in one: DNA barcoding overestimates the number of species when nuclear mitochondrial pseudogenes are coamplified

(2008) H. Song et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Use of Mean Instead of Smallest Interspecific Distances Exaggerates the Size of the “Barcoding Gap” and Leads to Misidentification

(2008) Rudolf Meier et al.   SYSTEMATIC BIOLOGY