Metagenome Skimming of Insect Specimen Pools: Potential for Comparative Genomics

Soup to Tree: The Phylogeny of Beetles Inferred by Mitochondrial Metagenomics of a Bornean Rainforest Sample

(2015) Alex Crampton-Platt et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phylogenetic community ecology of soil biodiversity using mitochondrial metagenomics

(2015) Carmelo Andújar et al.   MOLECULAR ECOLOGY

Validating the power of mitochondrial metagenomics for community ecology and phylogenetics of complex assemblages

(2015) Carola Gómez-Rodríguez et al.   Methods in Ecology and Evolution

Intragenomic polymorphisms among high-copy loci: a genus-wide study of nuclear ribosomal DNA inAsclepias(Apocynaceae)

(2015) Kevin Weitemier et al.   PeerJ

Horizontal gene transfers in insects

(2015) Atsushi Nakabachi   Current Opinion in Insect Science

Bulk De Novo Mitogenome Assembly from Pooled Total DNA Elucidates the Phylogeny of Weevils (Coleoptera: Curculionoidea)

(2014) Conrad P.D.T. Gillett et al.   MOLECULAR BIOLOGY AND EVOLUTION

Multiplex sequencing of pooled mitochondrial genomes—a crucial step toward biodiversity analysis using mito-metagenomics

(2014) Min Tang et al.   NUCLEIC ACIDS RESEARCH

Phylogenomics resolves the timing and pattern of insect evolution

(2014) B. Misof et al.   SCIENCE

Arthropods and inherited bacteria: from counting the symbionts to understanding how symbionts count

(2013) Olivier Duron et al.   BMC BIOLOGY

Genomics-driven discovery of the pneumocandin biosynthetic gene cluster in the fungus Glarea lozoyensis

(2013) Li Chen et al.   BMC GENOMICS

Reliable, verifiable and efficient monitoring of biodiversity via metabarcoding

(2013) Yinqiu Ji et al.   ECOLOGY LETTERS

The i5K Initiative: Advancing Arthropod Genomics for Knowledge, Human Health, Agriculture, and the Environment

(2013)   JOURNAL OF HEREDITY

Genome skimming reveals the origin of the Jerusalem Artichoke tuber crop species: neither from Jerusalem nor an artichoke

(2013) Dan G. Bock et al.   NEW PHYTOLOGIST

Microbial modulators of soil carbon storage: integrating genomic and metabolic knowledge for global prediction

(2013) Pankaj Trivedi et al.   TRENDS IN MICROBIOLOGY

Draft genome of the mountain pine beetle, Dendroctonus ponderosae Hopkins, a major forest pest

(2013) Christopher I Keeling et al.   GENOME BIOLOGY

Ultra-deep sequencing enables high-fidelity recovery of biodiversity for bulk arthropod samples without PCR amplification

(2013) Xin Zhou et al.   GigaScience

Unipro UGENE: a unified bioinformatics toolkit

(2012) Konstantin Okonechnikov et al.   BIOINFORMATICS

Beyond the genome: community-level analysis of the microbial world

(2012) Iratxe Zarraonaindia et al.   BIOLOGY & PHILOSOPHY

Algal Biogeography: Metagenomics Shows Distribution of a Picoplanktonic Pelagophyte

(2012) John A. Raven   CURRENT BIOLOGY

Transcriptome and full-length cDNA resources for the mountain pine beetle, Dendroctonus ponderosae Hopkins, a major insect pest of pine forests

(2012) Christopher I. Keeling et al.   INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY

The future of environmental DNA in ecology

(2012) NIGEL G. YOCCOZ   MOLECULAR ECOLOGY

Environmental DNA

(2012) PIERRE TABERLET et al.   MOLECULAR ECOLOGY

Towards next-generation biodiversity assessment using DNA metabarcoding

(2012) PIERRE TABERLET et al.   MOLECULAR ECOLOGY

The effect of plant identity and the level of plant decay on molecular gut content analysis in a herbivorous soil insect

(2012) Corinna Wallinger et al.   Molecular Ecology Resources

RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics

(2012) M. Lohse et al.   NUCLEIC ACIDS RESEARCH

GenBank

(2012) Dennis A. Benson et al.   NUCLEIC ACIDS RESEARCH

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Arthropod Diversity in a Tropical Forest

(2012) Y. Basset et al.   SCIENCE

Insect symbionts as hidden players in insect–plant interactions

(2012) Enric Frago et al.   TRENDS IN ECOLOGY & EVOLUTION

Navigating the tip of the genomic iceberg: Next-generation sequencing for plant systematics

(2011) Shannon C. K. Straub et al.   AMERICAN JOURNAL OF BOTANY

Exploration of community traits as ecological markers in microbial metagenomes

(2011) ALBERT BARBERÁN et al.   MOLECULAR ECOLOGY

Bacterial symbionts in insects or the story of communities affecting communities

(2011) J. Ferrari et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Assembly algorithms for next-generation sequencing data

(2010) Jason R. Miller et al.   GENOMICS

CDD: a Conserved Domain Database for the functional annotation of proteins

(2010) A. Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

Tropical Arthropod Species, More or Less?

(2010) R. M. May   SCIENCE

A Quick Guide to Large-Scale Genomic Data Mining

(2010) Curtis Huttenhower et al.   PLoS Computational Biology

Insect-Specific Polyketide Synthases (PKSs), Potential PKS-Nonribosomal Peptide Synthetase Hybrids, and Novel PKS Clades in Tropical Fungi

(2009) A. Amnuaykanjanasin et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

New perspectives in diet analysis based on DNA barcoding and parallel pyrosequencing: thetrnL approach

(2009) ALICE VALENTINI et al.   Molecular Ecology Resources

Sequencing technologies — the next generation

(2009) Michael L. Metzker   NATURE REVIEWS GENETICS

Stable Introduction of a Life-Shortening Wolbachia Infection into the Mosquito Aedes aegypti

(2009) C. J. McMeniman et al.   SCIENCE

Species detection using environmental DNA from water samples

(2008) G. F. Ficetola et al.   Biology Letters

A DESCRIPTIVE FRAMEWORK FOR THE FIELD OF DATA MINING AND KNOWLEDGE DISCOVERY

(2008) YI PENG et al.   INTERNATIONAL JOURNAL OF INFORMATION TECHNOLOGY & DECISION MAKING

Accurate whole human genome sequencing using reversible terminator chemistry

(2008) David R. Bentley et al.   NATURE

Wolbachia: master manipulators of invertebrate biology

(2008) John H. Werren et al.   NATURE REVIEWS MICROBIOLOGY