Dietary Interventions to Modulate the Gut Microbiome—How Far Away Are We From Precision Medicine

Antibiotic-induced microbiota perturbation causes gut endocannabinoidome changes, hippocampal neuroglial reorganization and depression in mice

(2018) F. Guida et al.   BRAIN BEHAVIOR AND IMMUNITY

Diet as a Trigger or Therapy for Inflammatory Bowel Diseases

(2017) James D. Lewis et al.   GASTROENTEROLOGY

Microbial strain-level population structure and genetic diversity from metagenomes

(2017) Duy Tin Truong et al.   GENOME RESEARCH

The low FODMAP diet: recent advances in understanding its mechanisms and efficacy in IBS

(2017) Heidi M Staudacher et al.   GUT

Whole grain-rich diet reduces body weight and systemic low-grade inflammation without inducing major changes of the gut microbiome: a randomised cross-over trial

(2017) Henrik Munch Roager et al.   GUT

Feeding the microbiota: transducer of nutrient signals for the host

(2017) Fergus Shanahan et al.   GUT

The Gut Microbiota and Alzheimer’s Disease

(2017) Chunmei Jiang et al.   JOURNAL OF ALZHEIMERS DISEASE

Use of the low-FODMAP diet in inflammatory bowel disease

(2017) Peter R Gibson   JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY

Worldwide incidence and prevalence of inflammatory bowel disease in the 21st century: a systematic review of population-based studies

(2017) Siew C Ng et al.   LANCET

Inflammation, metaflammation and immunometabolic disorders

(2017) Gökhan S. Hotamisligil   NATURE

Brain–gut–microbiota axis — mood, metabolism and behaviour

(2017) Timothy G. Dinan et al.   Nature Reviews Gastroenterology & Hepatology

Gut microbiota modulation of chemotherapy efficacy and toxicity

(2017) James L. Alexander et al.   Nature Reviews Gastroenterology & Hepatology

Rethinking Diet to Aid Human–Microbe Symbiosis

(2017) Muriel Derrien et al.   TRENDS IN MICROBIOLOGY

Evidence-based practice within nutrition: what are the barriers for improving the evidence and how can they be dealt with?

(2017) Martine Laville et al.   Trials

Barriers to the conduct of randomised clinical trials within all disease areas

(2017) Snezana Djurisic et al.   Trials

Specific barriers to the conduct of randomised clinical trials on medical devices

(2017) Edmund A. M. Neugebauer et al.   Trials

We need more randomized trials in nutrition—preferably large, long-term, and with negative results

(2016) John PA Ioannidis   AMERICAN JOURNAL OF CLINICAL NUTRITION

A web application for sample size and power calculation in case-control microbiome studies

(2016) Federico Mattiello et al.   BIOINFORMATICS

Modulation of gut microbiota dysbioses in type 2 diabetic patients by macrobiotic Ma-Pi 2 diet

(2016) Marco Candela et al.   BRITISH JOURNAL OF NUTRITION

Host–microbiome interactions in human type 2 diabetes following prebiotic fibre (galacto-oligosaccharide) intake

(2016) Camilla Pedersen et al.   BRITISH JOURNAL OF NUTRITION

Evidence-based clinical practice: Overview of threats to the validity of evidence and how to minimise them

(2016) Silvio Garattini et al.   European Journal of Internal Medicine

Bowel Disorders

(2016) Brian E. Lacy et al.   GASTROENTEROLOGY

Fungal microbiota dysbiosis in IBD

(2016) Harry Sokol et al.   GUT

FODMAPs alter symptoms and the metabolome of patients with IBS: a randomised controlled trial

(2016) Keith McIntosh et al.   GUT

Two Healthy Diets Modulate Gut Microbial Community Improving Insulin Sensitivity in a Human Obese Population

(2016) Carmen Haro et al.   JOURNAL OF CLINICAL ENDOCRINOLOGY & METABOLISM

British Dietetic Association systematic review and evidence-based practice guidelines for the dietary management of irritable bowel syndrome in adults (2016 update)

(2016) Y. A. McKenzie et al.   JOURNAL OF HUMAN NUTRITION AND DIETETICS

The microbiota in adaptive immune homeostasis and disease

(2016) Kenya Honda et al.   NATURE

Persistent microbiome alterations modulate the rate of post-dieting weight regain

(2016) Christoph A. Thaiss et al.   NATURE

The microbiome and innate immunity

(2016) Christoph A. Thaiss et al.   NATURE

Human gut microbes impact host serum metabolome and insulin sensitivity

(2016) Helle Krogh Pedersen et al.   NATURE

Signals from the gut microbiota to distant organs in physiology and disease

(2016) Bjoern O Schroeder et al.   NATURE MEDICINE

Diet, microorganisms and their metabolites and colon cancer

(2016) Stephen J. D. O'Keefe   Nature Reviews Gastroenterology & Hepatology

Prevotella in the gut: choose carefully

(2016) Ruth E. Ley   Nature Reviews Gastroenterology & Hepatology

Dietary antigens limit mucosal immunity by inducing regulatory T cells in the small intestine

(2016) K. S. Kim et al.   SCIENCE

Advances in nutritional therapy in inflammatory bowel diseases: Review

(2016) Andrzej Wędrychowicz   WORLD JOURNAL OF GASTROENTEROLOGY

Gut microbiota imbalance and colorectal cancer

(2016) Johan Gagnière   WORLD JOURNAL OF GASTROENTEROLOGY

Gut Microbiome of Coexisting BaAka Pygmies and Bantu Reflects Gradients of Traditional Subsistence Patterns

(2016) Andres Gomez et al.   Cell Reports

Impact of the gut microbiota on inflammation, obesity, and metabolic disease

(2016) Claire L. Boulangé et al.   Genome Medicine

Unusual sub-genus associations of faecal Prevotella and Bacteroides with specific dietary patterns

(2016) Francesca De Filippis et al.   Microbiome

Characterization of the Gut Microbial Community of Obese Patients Following a Weight-Loss Intervention Using Whole Metagenome Shotgun Sequencing

(2016) Sandrine Louis et al.   PLoS One

Effects of Arabinoxylan and Resistant Starch on Intestinal Microbiota and Short-Chain Fatty Acids in Subjects with Metabolic Syndrome: A Randomised Crossover Study

(2016) Stine Hald et al.   PLoS One

Randomised clinical trial: gut microbiome biomarkers are associated with clinical response to a low FODMAP diet in children with the irritable bowel syndrome

(2015) B. P. Chumpitazi et al.   ALIMENTARY PHARMACOLOGY & THERAPEUTICS

Power and sample-size estimation for microbiome studies using pairwise distances and PERMANOVA

(2015) Brendan J. Kelly et al.   BIOINFORMATICS

Personalized Nutrition by Prediction of Glycemic Responses

(2015) David Zeevi et al.   CELL

Inflammation, Antibiotics, and Diet as Environmental Stressors of the Gut Microbiome in Pediatric Crohn’s Disease

(2015) James D. Lewis et al.   Cell Host & Microbe

Dietary Fiber-Induced Improvement in Glucose Metabolism Is Associated with Increased Abundance of Prevotella

(2015) Petia Kovatcheva-Datchary et al.   Cell Metabolism

Gut Microbiome: Westernization and the Disappearance of Intestinal Diversity

(2015) Nicola Segata   CURRENT BIOLOGY

The gut microbiome in health and in disease

(2015) Andrew B. Shreiner et al.   CURRENT OPINION IN GASTROENTEROLOGY

Diet in the Pathogenesis and Treatment of Inflammatory Bowel Diseases

(2015) Dale Lee et al.   GASTROENTEROLOGY

Akkermansia muciniphilaand improved metabolic health during a dietary intervention in obesity: relationship with gut microbiome richness and ecology

(2015) Maria Carlota Dao et al.   GUT

High-level adherence to a Mediterranean diet beneficially impacts the gut microbiota and associated metabolome

(2015) Francesca De Filippis et al.   GUT

Pathogenesis of Parkinson disease—the gut–brain axis and environmental factors

(2015) Lisa Klingelhoefer et al.   Nature Reviews Neurology

Subsistence strategies in traditional societies distinguish gut microbiomes

(2015) Alexandra J. Obregon-Tito et al.   Nature Communications

The Gut Microbiota of Rural Papua New Guineans: Composition, Diversity Patterns, and Ecological Processes

(2015) Inés Martínez et al.   Cell Reports

The Influence of the Gut Microbiome on Obesity, Metabolic Syndrome and Gastrointestinal Disease

(2015) Parth J Parekh et al.   Clinical and Translational Gastroenterology

Whole-grain wheat consumption reduces inflammation in a randomized controlled trial on overweight and obese subjects with unhealthy dietary and lifestyle behaviors: role of polyphenols bound to cereal dietary fiber

(2014) Paola Vitaglione et al.   AMERICAN JOURNAL OF CLINICAL NUTRITION

Rethinking “Enterotypes”

(2014) Dan Knights et al.   Cell Host & Microbe

Beneficial Effects of Exclusive Enteral Nutrition in Crohnʼs Disease Are not Mediated by Faecalibacterium prausnitzii

(2014) Harry Sokol et al.   INFLAMMATORY BOWEL DISEASES

Role of Faecalibacterium prausnitzii in Crohnʼs Disease

(2014) Konstantinos Gerasimidis et al.   INFLAMMATORY BOWEL DISEASES

Decline in Presumptively Protective Gut Bacterial Species and Metabolites Are Paradoxically Associated with Disease Improvement in Pediatric Crohn’s Disease During Enteral Nutrition

(2014) Konstantinos Gerasimidis et al.   INFLAMMATORY BOWEL DISEASES

Clinical and Mucosal Improvement With Specific Carbohydrate Diet in Pediatric Crohn Disease

(2014) Stanley A. Cohen et al.   JOURNAL OF PEDIATRIC GASTROENTEROLOGY AND NUTRITION

Mechanisms and efficacy of dietary FODMAP restriction in IBS

(2014) Heidi M. Staudacher et al.   Nature Reviews Gastroenterology & Hepatology

The gut microbiota, bacterial metabolites and colorectal cancer

(2014) Petra Louis et al.   NATURE REVIEWS MICROBIOLOGY

Gut microbiota and allergy: the importance of the pregnancy period

(2014) Thomas R. Abrahamsson et al.   PEDIATRIC RESEARCH

Limitations of Observational Evidence: Implications for Evidence-Based Dietary Recommendations

(2014) Kevin C. Maki et al.   Advances in Nutrition

Diet, microbiota, and microbial metabolites in colon cancer risk in rural Africans and African Americans

(2013) Junhai Ou et al.   AMERICAN JOURNAL OF CLINICAL NUTRITION

Pharmacometabolomics: Implications for Clinical Pharmacology and Systems Pharmacology

(2013) R Kaddurah-Daouk et al.   CLINICAL PHARMACOLOGY & THERAPEUTICS

A decrease of the butyrate-producing speciesRoseburia hominisandFaecalibacterium prausnitziidefines dysbiosis in patients with ulcerative colitis

(2013) Kathleen Machiels et al.   GUT

Nutritional Therapy in Pediatric Crohn Disease

(2013) David L. Suskind et al.   JOURNAL OF PEDIATRIC GASTROENTEROLOGY AND NUTRITION

Richness of human gut microbiome correlates with metabolic markers

(2013) Emmanuelle Le Chatelier et al.   NATURE

Dietary intervention impact on gut microbial gene richness

(2013) Aurélie Cotillard et al.   NATURE

Diet rapidly and reproducibly alters the human gut microbiome

(2013) Lawrence A. David et al.   NATURE

Control of pathogens and pathobionts by the gut microbiota

(2013) Nobuhiko Kamada et al.   NATURE IMMUNOLOGY

Intestinal Microbial Metabolism of Phosphatidylcholine and Cardiovascular Risk

(2013) W.H. Wilson Tang et al.   NEW ENGLAND JOURNAL OF MEDICINE

The Impact of the Gut Microbiota on Human Health: An Integrative View

(2012) Jose C. Clemente et al.   CELL

Global Prevalence of and Risk Factors for Irritable Bowel Syndrome: A Meta-analysis

(2012) Rebecca M. Lovell et al.   Clinical Gastroenterology and Hepatology

Changes of faecal microbiota in patients with Crohn's disease treated with an elemental diet and total parenteral nutrition

(2012) Hisashi Shiga et al.   DIGESTIVE AND LIVER DISEASE

Fermentable Carbohydrate Restriction Reduces Luminal Bifidobacteria and Gastrointestinal Symptoms in Patients with Irritable Bowel Syndrome

(2012) Heidi M. Staudacher et al.   JOURNAL OF NUTRITION

A metagenome-wide association study of gut microbiota in type 2 diabetes

(2012) Junjie Qin et al.   NATURE

Diversity, stability and resilience of the human gut microbiota

(2012) Catherine A. Lozupone et al.   NATURE

The human microbiome: at the interface of health and disease

(2012) Ilseung Cho et al.   NATURE REVIEWS GENETICS

Categorization of the gut microbiota: enterotypes or gradients?

(2012) Ian B. Jeffery et al.   NATURE REVIEWS MICROBIOLOGY

Effect of exclusive enteral nutrition on gut microflora function in children with Crohn's disease

(2012) Bo Tjellström et al.   SCANDINAVIAN JOURNAL OF GASTROENTEROLOGY

Dietary Intake and Risk of Developing Inflammatory Bowel Disease: A Systematic Review of the Literature

(2011) Jason K Hou et al.   AMERICAN JOURNAL OF GASTROENTEROLOGY

Increasing Incidence and Prevalence of the Inflammatory Bowel Diseases With Time, Based on Systematic Review

(2011) Natalie A. Molodecky et al.   GASTROENTEROLOGY

An irritable bowel syndrome subtype defined by species-specific alterations in faecal microbiota

(2011) Ian B Jeffery et al.   GUT

Gut flora metabolism of phosphatidylcholine promotes cardiovascular disease

(2011) Zeneng Wang et al.   NATURE

Enterotypes of the human gut microbiome

(2011) Manimozhiyan Arumugam et al.   NATURE

The role of bacteria and pattern-recognition receptors in Crohn's disease

(2011) Si Ming Man et al.   Nature Reviews Gastroenterology & Hepatology

Dominant and diet-responsive groups of bacteria within the human colonic microbiota

(2010) Alan W Walker et al.   ISME Journal

The tale of our other genome

(2010) Liping Zhao   NATURE

Role of diet in the development of inflammatory bowel disease

(2009) Christine A. Chapman-Kiddell et al.   INFLAMMATORY BOWEL DISEASES

Systematic Review: The Role of Breastfeeding in the Development of Pediatric Inflammatory Bowel Disease

(2009) Andrew R. Barclay et al.   JOURNAL OF PEDIATRICS

Diagnosis and management of irritable bowel syndrome in adults in primary care: summary of NICE guidance

(2008) J Dalrymple et al.   BMJ-British Medical Journal

Dietary patterns and risk for Crohnʼs disease in children

(2007) Savio DʼSouza et al.   INFLAMMATORY BOWEL DISEASES