Restriction associated DNA-genotyping at multiple spatial scales in Arabidopsis lyrata reveals signatures of pathogen-mediated selection

Pollutants and Insecticides Drive Local Adaptation in African Malaria Mosquitoes

(2017) Colince Kamdem et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genome-Wide Analysis of Colonization History and Concomitant Selection in Arabidopsis lyrata

(2017) Tiina M. Mattila et al.   MOLECULAR BIOLOGY AND EVOLUTION

Unbroken: RADseq remains a powerful tool for understanding the genetics of adaptation in natural populations

(2017) Julian M. Catchen et al.   Molecular Ecology Resources

R-gene variation across Arabidopsis lyrata subspecies: effects of population structure, selection and mating system

(2016) James Buckley et al.   BMC EVOLUTIONARY BIOLOGY

What causes mating system shifts in plants? Arabidopsis lyrata as a case study

(2016) B K Mable et al.   HEREDITY

Diversifying selection is the dominant factor affecting the geographical variation of MHC class II genes in the Omei tree frog

(2016) J. Li et al.   JOURNAL OF ZOOLOGY

Rapid postglacial diversification and long-term stasis within the songbird genusJunco: phylogeographic and phylogenomic evidence

(2016) Guillermo Friis et al.   MOLECULAR ECOLOGY

Breaking RAD: an evaluation of the utility of restriction site-associated DNA sequencing for genome scans of adaptation

(2016) David B. Lowry et al.   Molecular Ecology Resources

Rapid cloning of disease-resistance genes in plants using mutagenesis and sequence capture

(2016) Burkhard Steuernagel et al.   NATURE BIOTECHNOLOGY

Sequencing of the genus Arabidopsis identifies a complex history of nonbifurcating speciation and abundant trans-specific polymorphism

(2016) Polina Yu Novikova et al.   NATURE GENETICS

Balancing selection on immunity genes: review of the current literature and new analysis in Drosophila melanogaster

(2016) Myriam Croze et al.   ZOOLOGY

Ecological genomics of local adaptation inCornus floridaL. by genotyping by sequencing

(2016) Andrew L. Pais et al.   Ecology and Evolution

Population Genomics for Understanding Adaptation in Wild Plant Species

(2015) Detlef Weigel et al.   Annual Review of Genetics

Copy number variation and genetic diversity of MHC Class IIb alleles in an alien population of Xenopus laevis

(2015) Barbara K. Mable et al.   IMMUNOGENETICS

Disease Resistance Gene Analogs (RGAs) in Plants

(2015) Manoj Sekhwal et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Detecting balancing selection in genomes: limits and prospects

(2015) Anna Fijarczyk et al.   MOLECULAR ECOLOGY

Fifteen years of genomewide scans for selection: trends, lessons and unaddressed genetic sources of complication

(2015) Ryan J. Haasl et al.   MOLECULAR ECOLOGY

Beyond the thale: comparative genomics and genetics of Arabidopsis relatives

(2015) Daniel Koenig et al.   NATURE REVIEWS GENETICS

Divergent sorting of a balanced ancestral polymorphism underlies the establishment of gene-flow barriers in Capsella

(2015) Adrien Sicard et al.   Nature Communications

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Taming the wild: resolving the gene pools of non-model Arabidopsislineages

(2014) Nora Hohmann et al.   BMC EVOLUTIONARY BIOLOGY

Whole-genome re-sequencing of non-model organisms: lessons from unmapped reads

(2014) A Gouin et al.   HEREDITY

PopGenome: An Efficient Swiss Army Knife for Population Genomic Analyses in R

(2014) Bastian Pfeifer et al.   MOLECULAR BIOLOGY AND EVOLUTION

Critical review of NGS analyses for de novo genotyping multigene families

(2014) Jackie Lighten et al.   MOLECULAR ECOLOGY

The long-term maintenance of a resistance polymorphism through diffuse interactions

(2014) Talia L. Karasov et al.   NATURE

Diversifying selection in the wheat stem rust fungus acts predominantly on pathogen-associated gene families and reveals candidate effectors

(2014) Jana Sperschneider et al.   Frontiers in Plant Science

Stacks: an analysis tool set for population genomics

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

On the importance of balancing selection in plants

(2013) Lynda F. Delph et al.   NEW PHYTOLOGIST

diveRsity: AnRpackage for the estimation and exploration of population genetics parameters and their associated errors

(2013) Kevin Keenan et al.   Methods in Ecology and Evolution

Signatures of balancing selection are maintained at disease resistance loci following mating system evolution and a population bottleneck in the genus Capsella

(2012) Gesseca Gos et al.   BMC EVOLUTIONARY BIOLOGY

Molecular evolutionary and population genomic analysis of the nine-spined stickleback using a modified restriction-site-associated DNA tag approach

(2012) Matthieu Bruneaux et al.   MOLECULAR ECOLOGY

The Evolutionary History of the Arabidopsis arenosa Complex: Diverse Tetraploids Mask the Western Carpathian Center of Species and Genetic Diversity

(2012) Roswitha Schmickl et al.   PLoS One

Population Genomic Scan for Candidate Signatures of Balancing Selection to Guide Antigen Characterization in Malaria Parasites

(2012) Alfred Amambua-Ngwa et al.   PLoS Genetics

adegenet 1.3-1: new tools for the analysis of genome-wide SNP data

(2011) Thibaut Jombart et al.   BIOINFORMATICS

Candidate Targets of Balancing Selection in the Genome of Staphylococcus aureus

(2011) J. C. Thomas et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Arabidopsis lyrata genome sequence and the basis of rapid genome size change

(2011) Tina T Hu et al.   NATURE GENETICS

Genome-wide genetic marker discovery and genotyping using next-generation sequencing

(2011) John W. Davey et al.   NATURE REVIEWS GENETICS

Genome-Wide Comparison of Nucleotide-Binding Site-Leucine-Rich Repeat-Encoding Genes in Arabidopsis

(2011) Y.-L. Guo et al.   PLANT PHYSIOLOGY

Genome-wide cloning and sequence analysis of leucine-rich repeat receptor-like protein kinase genes in Arabidopsis thaliana

(2010) Xiaoping Gou et al.   BMC GENOMICS

RECONSTRUCTING ORIGINS OF LOSS OF SELF-INCOMPATIBILITY AND SELFING IN NORTH AMERICAN ARABIDOPSIS LYRATA: A POPULATION GENETIC CONTEXT

(2010) John Paul Foxe et al.   EVOLUTION

The relative importance of factors determining genetic drift: mating system, spatial genetic structure, habitat and census size in Arabidopsis lyrata

(2010) Yvonne Willi et al.   NEW PHYTOLOGIST

Resolving postglacial phylogeography using high-throughput sequencing

(2010) K. J. Emerson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

How pathogens drive genetic diversity: MHC, mechanisms and misunderstandings

(2010) L. G. Spurgin et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Population Genomics of Parallel Adaptation in Threespine Stickleback using Sequenced RAD Tags

(2010) Paul A. Hohenlohe et al.   PLoS Genetics

Phylogeographic implications for the North American boreal-arcticArabidopsis lyratacomplex

(2009) Roswitha Schmickl et al.   Plant Ecology & Diversity

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS

A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective

(2008) M. Foll et al.   GENETICS

WRR4 Encodes a TIR-NB-LRR Protein That Confers Broad-Spectrum White Rust Resistance in Arabidopsis thaliana to Four Physiological Races of Albugo candida

(2008) M. Hossein Borhan et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Patterns of Polymorphism and Demographic History in Natural Populations of Arabidopsis lyrata

(2008) Jeffrey Ross-Ibarra et al.   PLoS One

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

(2008) Nathan A. Baird et al.   PLoS One