R-gene variation across Arabidopsis lyrata subspecies: effects of population structure, selection and mating system

Evidence for suppression of immunity as a driver for genomic introgressions and host range expansion in races of Albugo candida, a generalist parasite

(2015) Mark McMullan et al.   eLife

Evolutionary shifts to self-fertilisation restricted to geographic range margins in North AmericanArabidopsis lyrata

(2014) P. C. Griffin et al.   ECOLOGY LETTERS

Presence–Absence Variation in A. thaliana Is Primarily Associated with Genomic Signatures Consistent with Relaxed Selective Constraints

(2013) Stephen J. Bush et al.   MOLECULAR BIOLOGY AND EVOLUTION

Stacks: an analysis tool set for population genomics

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

On the importance of balancing selection in plants

(2013) Lynda F. Delph et al.   NEW PHYTOLOGIST

Bacterial Communities Associated with the Leaves and the Roots of Arabidopsis thaliana

(2013) Natacha Bodenhausen et al.   PLoS One

Signatures of balancing selection are maintained at disease resistance loci following mating system evolution and a population bottleneck in the genus Capsella

(2012) Gesseca Gos et al.   BMC EVOLUTIONARY BIOLOGY

Rapid genetic change underpins antagonistic coevolution in a natural host-pathogen metapopulation

(2012) Peter H. Thrall et al.   ECOLOGY LETTERS

Detecting Individual Sites Subject to Episodic Diversifying Selection

(2012) Ben Murrell et al.   PLoS Genetics

De novo sequence assembly of Albugo candida reveals a small genome relative to other biotrophic oomycetes

(2011) Matthew G Links et al.   BMC GENOMICS

Unusual signatures of highly adaptable R-loci in closely-related Arabidopsis species

(2011) Jiao Wang et al.   GENE

The Arabidopsis lyrata genome sequence and the basis of rapid genome size change

(2011) Tina T Hu et al.   NATURE GENETICS

Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology

(2010) W. Delport et al.   BIOINFORMATICS

pegas: an R package for population genetics with an integrated-modular approach

(2010) E. Paradis   BIOINFORMATICS

RECONSTRUCTING ORIGINS OF LOSS OF SELF-INCOMPATIBILITY AND SELFING IN NORTH AMERICAN ARABIDOPSIS LYRATA: A POPULATION GENETIC CONTEXT

(2010) John Paul Foxe et al.   EVOLUTION

Population structure and historical biogeography of European Arabidopsis lyrata

(2010) S W Ansell et al.   HEREDITY

The effect of mating system on growth of Arabidopsis lyrata in response to inoculation with the biotrophic parasite Albugo candida

(2010) P. N. HOEBE et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

The relative importance of factors determining genetic drift: mating system, spatial genetic structure, habitat and census size in Arabidopsis lyrata

(2010) Yvonne Willi et al.   NEW PHYTOLOGIST

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

(2009) P. Librado et al.   BIOINFORMATICS

Highly Endangered African Wild Dogs (Lycaon pictus) Lack Variation at the Major Histocompatibility Complex

(2009) C. D. Marsden et al.   JOURNAL OF HEREDITY

Multiple losses of self-incompatibility in North-AmericanArabidopsis lyrata?: Phylogeographic context and population genetic consequences

(2009) P. N. HOEBE et al.   MOLECULAR ECOLOGY

Phylogeographic implications for the North American boreal-arcticArabidopsis lyratacomplex

(2009) Roswitha Schmickl et al.   Plant Ecology & Diversity

Recent speciation associated with the evolution of selfing in Capsella

(2009) J. P. Foxe et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Structure–function analysis of the NB-ARC domain of plant disease resistance proteins

(2008) Gerben van Ooijen et al.   JOURNAL OF EXPERIMENTAL BOTANY

Conditional neutrality at two adjacent NBS-LRR disease resistance loci in natural populations ofArabidopsis lyrata

(2008) GESSECA GOS et al.   MOLECULAR ECOLOGY

WRR4 Encodes a TIR-NB-LRR Protein That Confers Broad-Spectrum White Rust Resistance in Arabidopsis thaliana to Four Physiological Races of Albugo candida

(2008) M. Hossein Borhan et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Patterns of Polymorphism and Demographic History in Natural Populations of Arabidopsis lyrata

(2008) Jeffrey Ross-Ibarra et al.   PLoS One

genepop’007: a complete re-implementation of the genepop software for Windows and Linux

(2007) FRANÇOIS ROUSSET   Molecular Ecology Resources