标题
Stacks: an analysis tool set for population genomics
作者
关键词
-
出版物
MOLECULAR ECOLOGY
Volume 22, Issue 11, Pages 3124-3140
出版商
Wiley
发表日期
2013-05-24
DOI
10.1111/mec.12354
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- The genomic consequences of adaptive divergence and reproductive isolation between species of manakins
- (2013) T. L. Parchman et al. MOLECULAR ECOLOGY
- The population structure and recent colonization history of Oregon threespine stickleback determined using restriction-site associated DNA-sequencing
- (2013) Julian Catchen et al. MOLECULAR ECOLOGY
- Pool-hmm: a Python program for estimating the allele frequency spectrum and detecting selective sweeps from next generation sequencing of pooled samples
- (2013) Simon Boitard et al. Molecular Ecology Resources
- Meiotic maps of sockeye salmon derived from massively parallel DNA sequencing
- (2012) Meredith V Everett et al. BMC GENOMICS
- RAD tag sequencing as a source of SNP markers in Cynara cardunculus L
- (2012) Davide Scaglione et al. BMC GENOMICS
- Characterisation of QTL-linked and genome-wide restriction site-associated DNA (RAD) markers in farmed Atlantic salmon
- (2012) Ross D Houston et al. BMC GENOMICS
- Application of next-generation sequencing for rapid marker development in molecular plant breeding: a case study on anthracnose disease resistance in Lupinus angustifolius L.
- (2012) Huaan Yang et al. BMC GENOMICS
- High-throughput polymorphism detection and genotyping in Brassica napus using next-generation RAD sequencing
- (2012) Anja Bus et al. BMC GENOMICS
- Construction of a high-density genetic map for grape using next generation restriction-site associated DNA sequencing
- (2012) Nian Wang et al. BMC PLANT BIOLOGY
- GENOMIC REGIONS WITH A HISTORY OF DIVERGENT SELECTION AFFECT FITNESS OF HYBRIDS BETWEEN TWO BUTTERFLY SPECIES
- (2012) Zachariah Gompert et al. EVOLUTION
- HYBRID SPECIATION AND INDEPENDENT EVOLUTION IN LINEAGES OF ALPINE BUTTERFLIES
- (2012) Chris C. Nice et al. EVOLUTION
- Properties and Power of the Drosophila Synthetic Population Resource for the Routine Dissection of Complex Traits
- (2012) Elizabeth G. King et al. GENETICS
- Recent nonhybrid origin of sunflower ecotypes in a novel habitat
- (2012) Rose L. Andrew et al. MOLECULAR ECOLOGY
- Population genomic signatures of divergent adaptation, gene flow and hybrid speciation in the rapid radiation of Lake Victoria cichlid fishes
- (2012) I. Keller et al. MOLECULAR ECOLOGY
- Genome-wide patterns of divergence and gene flow across a butterfly radiation
- (2012) Nicola J. Nadeau et al. MOLECULAR ECOLOGY
- Molecular evolutionary and population genomic analysis of the nine-spined stickleback using a modified restriction-site-associated DNA tag approach
- (2012) Matthieu Bruneaux et al. MOLECULAR ECOLOGY
- Genomic scan for single nucleotide polymorphisms reveals patterns of divergence and gene flow between ecologically divergent species
- (2012) Kai N. Stölting et al. MOLECULAR ECOLOGY
- The effect of RAD allele dropout on the estimation of genetic variation within and between populations
- (2012) Mathieu Gautier et al. MOLECULAR ECOLOGY
- Genome-wide association reveals genetic basis for the propensity to migrate in wild populations of rainbow and steelhead trout
- (2012) Benjamin C. Hecht et al. MOLECULAR ECOLOGY
- Genome-wide association genetics of an adaptive trait in lodgepole pine
- (2012) THOMAS L. PARCHMAN et al. MOLECULAR ECOLOGY
- Genome-wide RAD sequence data provide unprecedented resolution of species boundaries and relationships in the Lake Victoria cichlid adaptive radiation
- (2012) Catherine E. Wagner et al. MOLECULAR ECOLOGY
- RAD sequencing yields a high success rate for westslope cutthroat and rainbow trout species-diagnostic SNP assays
- (2012) STEPHEN J. AMISH et al. Molecular Ecology Resources
- Chromosome-scale selective sweeps shape Caenorhabditis elegans genomic diversity
- (2012) Erik C Andersen et al. NATURE GENETICS
- 2b-RAD: a simple and flexible method for genome-wide genotyping
- (2012) Shi Wang et al. NATURE METHODS
- Inferring Phylogenies from RAD Sequence Data
- (2012) Benjamin E. R. Rubin et al. PLoS One
- Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species
- (2012) Brant K. Peterson et al. PLoS One
- A RAD Tag Derived Marker Based Eggplant Linkage Map and the Location of QTLs Determining Anthocyanin Pigmentation
- (2012) Lorenzo Barchi et al. PLoS One
- Multiple Sex-Associated Regions and a Putative Sex Chromosome in Zebrafish Revealed by RAD Mapping and Population Genomics
- (2012) Jennifer L. Anderson et al. PLoS One
- Genomic consequences of multiple speciation processes in a stick insect
- (2012) P. Nosil et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Deep Phylogeographic Structure and Environmental Differentiation in the Carnivorous Plant Sarracenia alata
- (2012) Amanda J. Zellmer et al. SYSTEMATIC BIOLOGY
- High-Throughput Identification of Informative Nuclear Loci for Shallow-Scale Phylogenetics and Phylogeography
- (2012) Alan R. Lemmon et al. SYSTEMATIC BIOLOGY
- Rapid development of molecular markers by next-generation sequencing linked to a gene conferring phomopsis stem blight disease resistance for marker-assisted selection in lupin (Lupinus angustifolius L.) breeding
- (2012) Huaan Yang et al. THEORETICAL AND APPLIED GENETICS
- Sequencing of Pooled DNA Samples (Pool-Seq) Uncovers Complex Dynamics of Transposable Element Insertions in Drosophila melanogaster
- (2012) Robert Kofler et al. PLoS Genetics
- PoPoolation2: identifying differentiation between populations using sequencing of pooled DNA samples (Pool-Seq)
- (2011) R. Kofler et al. BIOINFORMATICS
- Identification of SNP and SSR markers in eggplant using RAD tag sequencing
- (2011) Lorenzo Barchi et al. BMC GENOMICS
- Construction and application for QTL analysis of a Restriction Site Associated DNA (RAD) linkage map in barley
- (2011) Yada Chutimanitsakun et al. BMC GENOMICS
- Association studies for next-generation sequencing
- (2011) L. Luo et al. GENOME RESEARCH
- A conserved haplotype controls parallel adaptation in geographically distant salmonid populations
- (2011) MICHAEL R. MILLER et al. MOLECULAR ECOLOGY
- Field guide to next-generation DNA sequencers
- (2011) TRAVIS C. GLENN Molecular Ecology Resources
- Next-generation RAD sequencing identifies thousands of SNPs for assessing hybridization between rainbow and westslope cutthroat trout
- (2011) PAUL A. HOHENLOHE et al. Molecular Ecology Resources
- Next-generation sequencing reveals phylogeographic structure and a species tree for recent bird divergences
- (2011) John E. McCormack et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Applications of next-generation sequencing to phylogeography and phylogenetics
- (2011) John E. McCormack et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Genome-wide genetic marker discovery and genotyping using next-generation sequencing
- (2011) John W. Davey et al. NATURE REVIEWS GENETICS
- What can patterns of differentiation across plant genomes tell us about adaptation and speciation?
- (2011) J. L. Strasburg et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Extensive linkage disequilibrium and parallel adaptive divergence across threespine stickleback genomes
- (2011) P. A. Hohenlohe et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- PoPoolation: A Toolbox for Population Genetic Analysis of Next Generation Sequencing Data from Pooled Individuals
- (2011) Robert Kofler et al. PLoS One
- A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species
- (2011) Robert J. Elshire et al. PLoS One
- Linkage Mapping and Comparative Genomics Using Next-Generation RAD Sequencing of a Non-Model Organism
- (2011) Simon W. Baxter et al. PLoS One
- Local De Novo Assembly of RAD Paired-End Contigs Using Short Sequencing Reads
- (2011) Paul D. Etter et al. PLoS One
- Mapping with RAD (restriction-site associated DNA) markers to rapidly identify QTL for stem rust resistance in Lolium perenne
- (2011) W. F. Pfender et al. THEORETICAL AND APPLIED GENETICS
- Stacks : Building and Genotyping Loci De Novo From Short-Read Sequences
- (2011) Julian M. Catchen et al. G3-Genes Genomes Genetics
- Fast and SNP-tolerant detection of complex variants and splicing in short reads
- (2010) T. D. Wu et al. BIOINFORMATICS
- The Next Generation of Molecular Markers From Massively Parallel Sequencing of Pooled DNA Samples
- (2010) Andreas Futschik et al. GENETICS
- The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
- (2010) A. McKenna et al. GENOME RESEARCH
- Using Population Genomics to Detect Selection in Natural Populations: Key Concepts and Methodological Considerations
- (2010) INTERNATIONAL JOURNAL OF PLANT SCIENCES
- Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows
- (2010) LAURENT EXCOFFIER et al. Molecular Ecology Resources
- Genome-wide association studies in diverse populations
- (2010) Noah A. Rosenberg et al. NATURE REVIEWS GENETICS
- Resolving postglacial phylogeography using high-throughput sequencing
- (2010) K. J. Emerson et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Adaptation genomics: the next generation
- (2010) Jessica Stapley et al. TRENDS IN ECOLOGY & EVOLUTION
- Population Genomics of Parallel Adaptation in Threespine Stickleback using Sequenced RAD Tags
- (2010) Paul A. Hohenlohe et al. PLoS Genetics
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
- (2009) P. Librado et al. BIOINFORMATICS
- DISENTANGLING THE EFFECTS OF EVOLUTIONARY, DEMOGRAPHIC, AND ENVIRONMENTAL FACTORS INFLUENCING GENETIC STRUCTURE OF NATURAL POPULATIONS: ATLANTIC HERRING AS A CASE STUDY
- (2009) Oscar E. Gaggiotti et al. EVOLUTION
- Estimation of Allele Frequencies From High-Coverage Genome-Sequencing Projects
- (2009) M. Lynch GENETICS
- Inferring weak population structure with the assistance of sample group information
- (2009) MELISSA J. HUBISZ et al. Molecular Ecology Resources
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective
- (2008) M. Foll et al. GENETICS
- Evolutionary and ecological functional genomics
- (2008) T Mitchell-Olds et al. HEREDITY
- Population genomics: a new generation of genome scans to bridge the gap with functional genomics
- (2008) AURÉLIE BONIN MOLECULAR ECOLOGY
- Next-generation DNA sequencing
- (2008) Jay Shendure et al. NATURE BIOTECHNOLOGY
- Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers
- (2008) Nathan A. Baird et al. PLoS One
- The impact of next-generation sequencing technology on genetics
- (2008) Elaine R. Mardis TRENDS IN GENETICS
- genepop’007: a complete re-implementation of the genepop software for Windows and Linux
- (2007) FRANÇOIS ROUSSET Molecular Ecology Resources
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now